Merge branch '17879-update-schema-salad' into main refs #17879

[arvados.git] / sdk / cwl / arvados_cwl / runner.py

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 9dc73f52ffdba57e33c80c3275bfa5a9426e8780..66dff809e477b56960f2e49317ff3996f2f9058c 100644 (file)
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -479,10 +479,11 @@ def packed_workflow(arvrunner, tool, merged_map):
             if "path" in v and "location" not in v:
                 v["location"] = v["path"]
                 del v["path"]
-            if "location" in v and not v["location"].startswith("keep:"):
-                v["location"] = merged_map[cur_id].resolved[v["location"]]
-            if "location" in v and v["location"] in merged_map[cur_id].secondaryFiles:
-                v["secondaryFiles"] = merged_map[cur_id].secondaryFiles[v["location"]]
+            if "location" in v and cur_id in merged_map:
+                if v["location"] in merged_map[cur_id].resolved:
+                    v["location"] = merged_map[cur_id].resolved[v["location"]]
+                if v["location"] in merged_map[cur_id].secondaryFiles:
+                    v["secondaryFiles"] = merged_map[cur_id].secondaryFiles[v["location"]]
             if v.get("class") == "DockerRequirement":
                 v["http://arvados.org/cwl#dockerCollectionPDH"] = arvados_cwl.arvdocker.arv_docker_get_image(arvrunner.api, v, True,
                                                                                                              arvrunner.project_uuid,