set -e -o pipefail
+export GEM_HOME=/var/lib/arvados/lib/ruby/gems/2.7.0
+export ARVADOS_CONTAINER_PATH=/var/lib/arvados-arvbox
+
if ! grep "^arvbox:" /etc/passwd >/dev/null 2>/dev/null ; then
HOSTUID=$(ls -nd /usr/src/arvados | sed 's/ */ /' | cut -d' ' -f4)
HOSTGID=$(ls -nd /usr/src/arvados | sed 's/ */ /' | cut -d' ' -f5)
- mkdir -p /var/lib/arvados/git /var/lib/gems \
+ mkdir -p $ARVADOS_CONTAINER_PATH/git $GEM_HOME \
/var/lib/passenger /var/lib/gopath \
/var/lib/pip /var/lib/npm
+ if test -z "$ARVBOX_HOME" ; then
+ ARVBOX_HOME=$ARVADOS_CONTAINER_PATH
+ fi
+
groupadd --gid $HOSTGID --non-unique arvbox
groupadd --gid $HOSTGID --non-unique git
- useradd --home-dir /var/lib/arvados \
+ useradd --home-dir $ARVBOX_HOME \
--uid $HOSTUID --gid $HOSTGID \
--non-unique \
--groups docker \
--shell /bin/bash \
arvbox
- useradd --home-dir /var/lib/arvados/git --uid $HOSTUID --gid $HOSTGID --non-unique git
+ useradd --home-dir $ARVADOS_CONTAINER_PATH/git --uid $HOSTUID --gid $HOSTGID --non-unique git
useradd --groups docker crunch
- chown arvbox:arvbox -R /usr/local /var/lib/arvados /var/lib/gems \
- /var/lib/passenger /var/lib/postgresql \
- /var/lib/nginx /var/log/nginx /etc/ssl/private \
- /var/lib/gopath /var/lib/pip /var/lib/npm
-
- mkdir -p /var/lib/gems/ruby
- chown arvbox:arvbox -R /var/lib/gems/ruby
+ if [[ "$1" != --no-chown ]] ; then
+ chown arvbox:arvbox -R /usr/local $ARVADOS_CONTAINER_PATH $GEM_HOME \
+ /var/lib/passenger /var/lib/postgresql \
+ /var/lib/nginx /var/log/nginx /etc/ssl/private \
+ /var/lib/gopath /var/lib/pip /var/lib/npm \
+ /var/lib/arvados
+ fi
mkdir -p /tmp/crunch0 /tmp/crunch1
chown crunch:crunch -R /tmp/crunch0 /tmp/crunch1
+ # singularity needs to be owned by root and suid
+ chown root /var/lib/arvados/bin/singularity \
+ /var/lib/arvados/etc/singularity/singularity.conf \
+ /var/lib/arvados/etc/singularity/capability.json \
+ /var/lib/arvados/etc/singularity/ecl.toml
+ chmod u+s /var/lib/arvados/bin/singularity
+
echo "arvbox ALL=(crunch) NOPASSWD: ALL" >> /etc/sudoers
+
+ cat <<EOF > /etc/profile.d/paths.sh
+export PATH=/var/lib/arvados/bin:/usr/local/bin:/usr/bin:/bin
+export GEM_HOME=/var/lib/arvados/lib/ruby/gems/2.7.0
+export npm_config_cache=/var/lib/npm
+export npm_config_cache_min=Infinity
+export R_LIBS=/var/lib/Rlibs
+export GOPATH=/var/lib/gopath
+EOF
+
+ mkdir -p /etc/arvados
+ chown -R arvbox:arvbox /etc/arvados
fi
if ! grep "^fuse:" /etc/group >/dev/null 2>/dev/null ; then