5990: If --docker-image not specified, don't provide
[arvados.git] / doc / user / topics / tutorial-gatk-variantfiltration.html.textile.liquid
index ea608b4bc1c15a278f919abe8f8677e943f39b8c..bf9b24272ce6c6085a2956dff5c6bb6056c60833 100644 (file)
@@ -6,7 +6,7 @@ title: "Using GATK with Arvados"
 
 This tutorial demonstrates how to use the Genome Analysis Toolkit (GATK) with Arvados. In this example we will install GATK and then create a VariantFiltration job to assign pass/fail scores to variants in a VCF file.
 
-*This tutorial assumes that you are "logged into an Arvados VM instance":{{site.baseurl}}/user/getting_started/ssh-access.html#login, and have a "working environment.":{{site.baseurl}}/user/getting_started/check-environment.html*
+{% include 'tutorial_expectations' %}
 
 h2. Installing GATK
 
@@ -149,12 +149,7 @@ Now start a job:
  "is_locked_by_uuid":null,
  "log":null,
  "runtime_constraints":{},
- "tasks_summary":{},
- "dependencies":[
-  "5ee633fe2569d2a42dd81b07490d5d13+82",
-  "c905c8d8443a9c44274d98b7c6cfaa32+94",
-  "d237a90bae3870b3b033aea1e99de4a9+10820"
- ]
+ "tasks_summary":{}
 }
 </code></pre>
 </notextile>