Merge branch 'wtsi/13809-root_url-protocol-port-configuration'

[arvados.git] / sdk / cwl / test_with_arvbox.sh

diff --git a/sdk/cwl/test_with_arvbox.sh b/sdk/cwl/test_with_arvbox.sh
index 88860c04eb0a390f7abb8477e6f351fdb06fe402..f924adbbd615e11f84f4f773058d5fb2c27e8ff8 100755 (executable)
--- a/sdk/cwl/test_with_arvbox.sh
+++ b/sdk/cwl/test_with_arvbox.sh
@@ -48,6 +48,8 @@ if test -z "$ARVBOX_CONTAINER" ; then
 fi
 
 if test $reset_container = 1 ; then
+    arvbox stop
+    docker rm $ARVBOX_CONTAINER
     arvbox reset -f
 fi
 
@@ -81,9 +83,9 @@ export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados/superuser_token)
 if test "$tag" = "latest" ; then
   arv-keepdocker --pull arvados/jobs $tag
 else
-  jobsimg=$(curl http://versions.arvados.org/v1/commit/$tag | python -c "import json; import sys; sys.stdout.write(json.load(sys.stdin)['Versions']['Docker']['arvados/jobs'])")
-  arv-keepdocker --pull arvados/jobs $jobsimg
-  docker tag -f arvados/jobs:$jobsimg arvados/jobs:latest
+  jobsimg=\$(curl http://versions.arvados.org/v1/commit/$tag | python -c "import json; import sys; sys.stdout.write(json.load(sys.stdin)['Versions']['Docker']['arvados/jobs'])")
+  arv-keepdocker --pull arvados/jobs \$jobsimg
+  docker tag arvados/jobs:\$jobsimg arvados/jobs:latest
   arv-keepdocker arvados/jobs latest
 fi
 
@@ -100,7 +102,7 @@ EOF2
 chmod +x /tmp/cwltest/arv-cwl-containers
 
 env
-exec ./run_test.sh EXTRA=--compute-checksum $@
+exec ./run_test.sh RUNNER=/tmp/cwltest/arv-cwl-containers EXTRA=--compute-checksum $@
 EOF
 
 CODE=$?