"""
def __init__(self, api_client, work_api=None, keep_client=None,
- output_name=None, output_tags=None, num_retries=4,
- thread_count=4):
+ output_name=None, output_tags=None, default_storage_classes="default",
+ num_retries=4, thread_count=4):
self.api = api_client
self.processes = {}
self.workflow_eval_lock = threading.Condition(threading.RLock())
self.trash_intermediate = False
self.thread_count = thread_count
self.poll_interval = 12
+ self.default_storage_classes = default_storage_classes
if keep_client is not None:
self.keep_client = keep_client
submit_runner_image=kwargs.get("submit_runner_image"),
intermediate_output_ttl=kwargs.get("intermediate_output_ttl"),
merged_map=merged_map,
+ default_storage_classes=self.default_storage_classes,
priority=kwargs.get("priority"),
secret_store=self.secret_store)
elif self.work_api == "jobs":
if self.output_tags is None:
self.output_tags = ""
- storage_classes = kwargs.get("storage_classes")
+ storage_classes = kwargs.get("storage_classes").strip().split(",")
self.final_output, self.final_output_collection = self.make_output_collection(self.output_name, storage_classes, self.output_tags, self.final_output)
self.set_crunch_output()
parser.add_argument("--enable-dev", action="store_true",
help="Enable loading and running development versions "
"of CWL spec.", default=False)
- parser.add_argument('--storage-classes', default="default",
+ parser.add_argument('--storage-classes', default="default", type=str,
help="Specify comma separated list of storage classes to be used when saving workflow output to Keep.")
parser.add_argument("--intermediate-output-ttl", type=int, metavar="N",
job_order_object = None
arvargs = parser.parse_args(args)
- arvargs.storage_classes = arvargs.storage_classes.strip().split(',')
- if len(arvargs.storage_classes) > 1:
+ if len(arvargs.storage_classes.strip().split(',')) > 1:
logger.error("Multiple storage classes are not supported currently.")
return 1
keep_client = arvados.keep.KeepClient(api_client=api_client, num_retries=4)
runner = ArvCwlRunner(api_client, work_api=arvargs.work_api, keep_client=keep_client,
num_retries=4, output_name=arvargs.output_name,
- output_tags=arvargs.output_tags,
+ output_tags=arvargs.output_tags, default_storage_classes=parser.get_default("storage_classes"),
thread_count=arvargs.thread_count)
except Exception as e:
logger.error(e)