output_name, output_tags, submit_runner_ram=0,
name=None, on_error=None, submit_runner_image=None,
intermediate_output_ttl=0, merged_map=None,
- priority=None, secret_store=None):
+ priority=None, secret_store=None, collection_cache_size=None):
self.arvrunner = runner
self.tool = tool
self.job_order = job_order
self.submit_runner_cores = 1
self.submit_runner_ram = 1024 # defaut 1 GiB
+ self.collection_cache_size = 256
runner_resource_req, _ = self.tool.get_requirement("http://arvados.org/cwl#WorkflowRunnerResources")
if runner_resource_req:
self.submit_runner_cores = runner_resource_req["coresMin"]
if runner_resource_req.get("ramMin"):
self.submit_runner_ram = runner_resource_req["ramMin"]
+ if runner_resource_req.get("keep_cache"):
+ self.collection_cache_size = runner_resource_req["keep_cache"]
if submit_runner_ram:
# Command line / initializer overrides default and/or spec from workflow
self.submit_runner_ram = submit_runner_ram
+ if collection_cache_size:
+ # Command line / initializer overrides default and/or spec from workflow
+ self.collection_cache_size = collection_cache_size
+
if self.submit_runner_ram <= 0:
raise Exception("Value of submit-runner-ram must be greater than zero")