refs 5930: misc. small documentation fixes

[arvados.git] / doc / user / tutorials / running-external-program.html.textile.liquid

diff --git a/doc/user/tutorials/running-external-program.html.textile.liquid b/doc/user/tutorials/running-external-program.html.textile.liquid
index f13d1c8319a52d0c548c023f796887c2f12504d4..18f5f7d35f75eabeb2c45be8744846572bc7d548 100644 (file)
--- a/doc/user/tutorials/running-external-program.html.textile.liquid
+++ b/doc/user/tutorials/running-external-program.html.textile.liquid
@@ -8,15 +8,13 @@ This tutorial demonstrates how to construct a two stage pipeline template that u
 
 {% include 'tutorial_expectations' %}
 
-Use the following command to create a new empty template using @arv pipeline_template create@:
+Use the following command to create an empty template using @arv create pipeline_template@:
 
 <notextile>
-<pre><code>~$ <span class="userinput">arv edit $(arv --format=uuid pipeline_template create --pipeline-template '{}') name components </span></code></pre>
+<pre><code>~$ <span class="userinput">arv create pipeline_template</span></code></pre>
 </notextile>
 
-* @--format=uuid@ option prints out just the unique identifier for the new template, instead of the entire template record (default)
-
-This will open the template record in an interactive text editor (as specified by $EDITOR or $VISUAL, otherwise defaults to @nano@) using @arv edit@.  Now add the following content:
+This will open the template record in an interactive text editor (as specified by $EDITOR or $VISUAL, otherwise defaults to @nano@).  Now, update the contents of the editor with the following content:
 
 <notextile>{% code 'tutorial_bwa_sortsam_pipeline' as javascript %}</notextile>
 
@@ -40,6 +38,8 @@ This will open the template record in an interactive text editor (as specified b
 
 When using @run-command@, the tool should write its output to the current working directory.  The output will be automatically uploaded to Keep when the job completes.
 
+See the "run-command reference":{{site.baseurl}}/user/topics/run-command.html for more information about using @run-command@.
+
 h2. Running your pipeline
 
 Your new pipeline template should appear at the top of the Workbench "pipeline&nbsp;templates":https://{{ site.arvados_workbench_host }}/pipeline_templates page.  You can run your pipeline "using Workbench":tutorial-pipeline-workbench.html or the "command line.":{{site.baseurl}}/user/topics/running-pipeline-command-line.html