h2(#upload-using-command). Upload using command line tool
{% include 'tutorial_expectations' %}
To upload a file to Keep using @arv keep put@:
~$ arv keep put var-GS000016015-ASM.tsv.bz2
216M / 216M 100.0%
Collection saved as ...
qr1hi-4zz18-xxxxxxxxxxxxxxx
The output value @qr1hi-4zz18-xxxxxxxxxxxxxxx@ is the uuid of the Arvados collection created.
The file used in this example is a freely available TSV file containing variant annotations from "Personal Genome Project (PGP)":http://www.pgp-hms.org participant "hu599905.":https://my.pgp-hms.org/profile/hu599905), downloadable "here":https://warehouse.pgp-hms.org/warehouse/f815ec01d5d2f11cb12874ab2ed50daa+234+K@ant/var-GS000016015-ASM.tsv.bz2.
It is also possible to upload an entire directory with @arv keep put@:
~$ mkdir tmp
~$ echo "hello alice" > tmp/alice.txt
~$ echo "hello bob" > tmp/bob.txt
~$ echo "hello carol" > tmp/carol.txt
~$ arv keep put tmp
0M / 0M 100.0%
Collection saved as ...
qr1hi-4zz18-yyyyyyyyyyyyyyy
In both examples, the @arv keep put@ command created a collection. The first collection contains the single uploaded file. The second collection contains the entire uploaded directory.
@arv keep put@ accepts quite a few optional command line arguments, which are described on the "arv subcommands":{{site.baseurl}}/sdk/cli/subcommands.html#arv-keep-put page.
h3. Locate your collection in Workbench
Visit the Workbench *Dashboard*. Click on *Projects*
dropdown menu in the top navigation menu, select your *Home* project. Your newly uploaded collection should appear near the top of the *Data collections* tab. The collection name printed by @arv keep put@ will appear under the *name* column.
To move the collection to a different project, check the box at the left of the collection row. Pull down the *Selection...*
menu near the top of the page tab, and select *Move selected...* button. This will open a dialog box where you can select a destination project for the collection. Click a project, then finally the
Move button.
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Click on the *
Show* button next to the collection's listing on a project page to go to the Workbench page for your collection. On this page, you can see the collection's contents, download individual files, and set sharing options.
notextile.