R SDK for Arvados

Examples of usage:

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Get collection:

arv <- Arvados("insert_token", "insert_host_name")
arv$collection_get("uuid")

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List collections:

collectionList <- arv$collection_list(list("uuid", "=" "aaaaa-bbbbb-ccccccccccccccc"), limit = 10, offset = 2)

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Delete collection:

deletedCollection <- arv$collection_delete("uuid")

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Update collection:

updatedCollection <- arv$collection_update("uuid", list(collection = list(name = "new_name", description = "new_desciption")))

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Create collection:

updatedCollection <- arv$collection_update("uuid", list(collection = list(name = "new_name", description = "new_desciption")))

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Things I'm currently working on and are not finished.

Collection manipulation:

arv <- Arvados("insert_token", "insert_host_name")

//This will be removed
arv$setWebDavToken("webdav_token")
arv$setWebDavHostName("full_path_to_the_collection_on_webdav_server")

collection <- Collection(arv, "uuid")
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This will return all files in collection as character vector.

listOfFilesInCollection <- collection$items
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This will return ArvadosFile or Subcollection from internal tree-like structure.

collection <- Collection(arv, "uuid")

arvadosFile <- collection.get("location/to/my/file.exe")
arvadosSubcollection <- collection.get("location/to/my/directory/")


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