package main import ( "flag" "fmt" "git.curoverse.com/arvados.git/sdk/go/arvadosclient" "io" "log" "os" "os/exec" "os/signal" "sync" "syscall" "time" ) func main() { err := doMain() if err != nil { log.Fatalf("%q", err) } } var ( arv arvadosclient.ArvadosClient runningCmds map[string]*exec.Cmd runningCmdsMutex sync.Mutex waitGroup sync.WaitGroup doneProcessing chan bool sigChan chan os.Signal ) func doMain() error { flags := flag.NewFlagSet("crunch-dispatch-slurm", flag.ExitOnError) pollInterval := flags.Int( "poll-interval", 10, "Interval in seconds to poll for queued containers") priorityPollInterval := flags.Int( "container-priority-poll-interval", 60, "Interval in seconds to check priority of a dispatched container") crunchRunCommand := flags.String( "crunch-run-command", "/usr/bin/crunch-run", "Crunch command to run container") // Parse args; omit the first arg which is the command name flags.Parse(os.Args[1:]) var err error arv, err = arvadosclient.MakeArvadosClient() if err != nil { return err } // Channel to terminate doneProcessing = make(chan bool) // Graceful shutdown sigChan = make(chan os.Signal, 1) signal.Notify(sigChan, syscall.SIGINT, syscall.SIGTERM, syscall.SIGQUIT) go func(sig <-chan os.Signal) { for sig := range sig { log.Printf("Caught signal: %v", sig) doneProcessing <- true } }(sigChan) // Run all queued containers runQueuedContainers(*pollInterval, *priorityPollInterval, *crunchRunCommand) // Wait for all running crunch jobs to complete / terminate waitGroup.Wait() return nil } // Poll for queued containers using pollInterval. // Invoke dispatchLocal for each ticker cycle, which will run all the queued containers. // // Any errors encountered are logged but the program would continue to run (not exit). // This is because, once one or more crunch jobs are running, // we would need to wait for them complete. func runQueuedContainers(pollInterval, priorityPollInterval int, crunchRunCommand string) { ticker := time.NewTicker(time.Duration(pollInterval) * time.Second) for { select { case <-ticker.C: dispatchSlurm(priorityPollInterval, crunchRunCommand) case <-doneProcessing: ticker.Stop() return } } } // Container data type Container struct { UUID string `json:"uuid"` State string `json:"state"` Priority int `json:"priority"` } // ContainerList is a list of the containers from api type ContainerList struct { Items []Container `json:"items"` } // Get the list of queued containers from API server and invoke run for each container. func dispatchSlurm(priorityPollInterval int, crunchRunCommand string) { params := arvadosclient.Dict{ "filters": [][]string{[]string{"state", "=", "Queued"}}, } var containers ContainerList err := arv.List("containers", params, &containers) if err != nil { log.Printf("Error getting list of queued containers: %q", err) return } for i := 0; i < len(containers.Items); i++ { log.Printf("About to submit queued container %v", containers.Items[i].UUID) // Run the container go run(containers.Items[i].UUID, crunchRunCommand, priorityPollInterval) } } // Run queued container: // Set container state to locked (TBD) // Run container using the given crunch-run command // Set the container state to Running // If the container priority becomes zero while crunch job is still running, terminate it. func run(uuid string, crunchRunCommand string, priorityPollInterval int) { stdinReader, stdinWriter := io.Pipe() cmd := exec.Command("sbatch", "--job-name="+uuid) cmd.Stdin = stdinReader cmd.Stderr = os.Stderr cmd.Stdout = os.Stderr if err := cmd.Start(); err != nil { log.Printf("Error running container for %v: %q", uuid, err) return } fmt.Fprintf(stdinWriter, "#!/bin/sh\nexec %s %s\n", crunchRunCommand, uuid) stdinWriter.Close() cmd.Wait() // Update container status to Running err := arv.Update("containers", uuid, arvadosclient.Dict{ "container": arvadosclient.Dict{"state": "Running"}}, nil) if err != nil { log.Printf("Error updating container state to 'Running' for %v: %q", uuid, err) } log.Printf("Submitted container run for %v", uuid) // A goroutine to terminate the runner if container priority becomes zero priorityTicker := time.NewTicker(time.Duration(priorityPollInterval) * time.Second) go func() { for _ = range priorityTicker.C { var container Container err := arv.Get("containers", uuid, nil, &container) if err != nil { log.Printf("Error getting container info for %v: %q", uuid, err) } else { if container.Priority == 0 { priorityTicker.Stop() cancelcmd := exec.Command("scancel", "--name="+uuid) cancelcmd.Run() } } } }() }