#!/usr/bin/env cwl-runner
# Copyright (C) The Arvados Authors. All rights reserved.
#
# SPDX-License-Identifier: CC-BY-SA-3.0

# Example input file using UUIDs to reference input collections. These
# will be resolved to content addresses before running the workflow.

cwl:tool: bwa-mem.cwl
reference:
  class: File
  location: keep:pirca-4zz18-jyjuzyqq14qspl7/19.fasta.bwt
read_p1:
  class: File
  location: keep:pirca-4zz18-fhbq692jyemnknq/HWI-ST1027_129_D0THKACXX.1_1.fastq
read_p2:
  class: File
  location: keep:pirca-4zz18-fhbq692jyemnknq/HWI-ST1027_129_D0THKACXX.1_2.fastq
group_id: arvados_tutorial
sample_id: HWI-ST1027_129
PL: illumina