# Copyright (C) The Arvados Authors. All rights reserved. # # SPDX-License-Identifier: Apache-2.0 import arvados import unittest import mock from arvados import api, vocabulary class VocabularyTest(unittest.TestCase): EXAMPLE_VOC = { 'tags': { 'IDTAGANIMALS': { 'strict': False, 'labels': [ {'label': 'Animal'}, {'label': 'Creature'}, ], 'values': { 'IDVALANIMAL1': { 'labels': [ {'label': 'Human'}, {'label': 'Homo sapiens'}, ], }, 'IDVALANIMAL2': { 'labels': [ {'label': 'Elephant'}, {'label': 'Loxodonta'}, ], }, }, }, 'IDTAGIMPORTANCE': { 'strict': True, 'labels': [ {'label': 'Importance'}, {'label': 'Priority'}, ], 'values': { 'IDVALIMPORTANCE1': { 'labels': [ {'label': 'High'}, {'label': 'High priority'}, ], }, 'IDVALIMPORTANCE2': { 'labels': [ {'label': 'Medium'}, {'label': 'Medium priority'}, ], }, 'IDVALIMPORTANCE3': { 'labels': [ {'label': 'Low'}, {'label': 'Low priority'}, ], }, }, }, }, } def setUp(self): self.api = arvados.api('v1') self.voc = vocabulary.Vocabulary(self.EXAMPLE_VOC) self.api.vocabulary = mock.MagicMock(return_value=self.EXAMPLE_VOC) def test_vocabulary_keys(self): self.assertEqual(self.voc.strict_keys, False) self.assertEqual( self.voc.key_aliases.keys(), set(['idtaganimals', 'creature', 'animal', 'idtagimportance', 'importance', 'priority']) ) vk = self.voc.key_aliases['creature'] self.assertEqual(vk.strict, False) self.assertEqual(vk.identifier, 'IDTAGANIMALS') self.assertEqual(vk.aliases, ['Animal', 'Creature']) self.assertEqual(vk.preferred_label, 'Animal') self.assertEqual( vk.value_aliases.keys(), set(['idvalanimal1', 'human', 'homo sapiens', 'idvalanimal2', 'elephant', 'loxodonta']) ) def test_vocabulary_values(self): vk = self.voc.key_aliases['creature'] vv = vk.value_aliases['human'] self.assertEqual(vv.identifier, 'IDVALANIMAL1') self.assertEqual(vv.aliases, ['Human', 'Homo sapiens']) self.assertEqual(vv.preferred_label, 'Human') def test_vocabulary_indexing(self): self.assertEqual(self.voc['creature']['human'].identifier, 'IDVALANIMAL1') self.assertEqual(self.voc['Creature']['Human'].identifier, 'IDVALANIMAL1') self.assertEqual(self.voc['CREATURE']['HUMAN'].identifier, 'IDVALANIMAL1') with self.assertRaises(KeyError): inexistant = self.voc['foo'] def test_empty_vocabulary(self): voc = vocabulary.Vocabulary({}) self.assertEqual(voc.strict_keys, False) self.assertEqual(voc.key_aliases, {}) def test_load_vocabulary_with_api(self): voc = vocabulary.load_vocabulary(self.api) self.assertEqual(voc['creature']['human'].identifier, 'IDVALANIMAL1') self.assertEqual(voc['Creature']['Human'].identifier, 'IDVALANIMAL1') self.assertEqual(voc['CREATURE']['HUMAN'].identifier, 'IDVALANIMAL1') def test_convert_to_identifiers(self): cases = [ {'IDTAGIMPORTANCE': 'IDVALIMPORTANCE1'}, {'IDTAGIMPORTANCE': 'High'}, {'importance': 'IDVALIMPORTANCE1'}, {'priority': 'high priority'}, ] for case in cases: self.assertEqual( self.voc.convert_to_identifiers(case), {'IDTAGIMPORTANCE': 'IDVALIMPORTANCE1'}, "failing test case: {}".format(case) ) def test_convert_to_labels(self): cases = [ {'IDTAGIMPORTANCE': 'IDVALIMPORTANCE1'}, {'IDTAGIMPORTANCE': 'High'}, {'importance': 'IDVALIMPORTANCE1'}, {'priority': 'high priority'}, ] for case in cases: self.assertEqual( self.voc.convert_to_labels(case), {'Importance': 'High'}, "failing test case: {}".format(case) )