import requests import email.utils import time import datetime import re import arvados import arvados.collection import urlparse import logging logger = logging.getLogger('arvados.cwl-runner') def my_formatdate(dt): return email.utils.formatdate(timeval=time.mktime(now.timetuple()), localtime=False, usegmt=True) def my_parsedate(text): parsed = email.utils.parsedate(text) if parsed: return datetime.datetime(*parsed[:6]) else: datetime.datetime(1970, 1, 1) def fresh_cache(url, properties): pr = properties[url] expires = None logger.debug("Checking cache freshness for %s using %s", url, pr) if "Cache-Control" in pr: if re.match(r"immutable", pr["Cache-Control"]): return True g = re.match(r"(s-maxage|max-age)=(\d+)", pr["Cache-Control"]) if g: expires = my_parsedate(pr["Date"]) + datetime.timedelta(seconds=int(g.group(2))) if expires is None and "Expires" in pr: expires = my_parsedate(pr["Expires"]) if expires is None: # Use a default cache time of 24 hours if upstream didn't set # any cache headers, to reduce redundant downloads. expires = my_parsedate(pr["Date"]) + datetime.timedelta(hours=24) if not expires: return False return (datetime.datetime.utcnow() < expires) def remember_headers(url, properties, headers): properties.setdefault(url, {}) for h in ("Cache-Control", "ETag", "Expires", "Date", "Content-Length"): if h in headers: properties[url][h] = headers[h] if "Date" not in headers: properties[url]["Date"] = my_formatdate(datetime.datetime.utcnow()) def changed(url, properties): req = requests.head(url, allow_redirects=True) remember_headers(url, properties, req.headers) if req.status_code != 200: raise Exception("Got status %s" % req.status_code) pr = properties[url] if "ETag" in pr and "ETag" in req.headers: if pr["ETag"] == req.headers["ETag"]: return False return True def http_to_keep(api, project_uuid, url): r = api.collections().list(filters=[["properties", "exists", url]]).execute() for item in r["items"]: properties = item["properties"] if fresh_cache(url, properties): # Do nothing cr = arvados.collection.CollectionReader(item["portable_data_hash"], api_client=api) return "keep:%s/%s" % (item["portable_data_hash"], cr.keys()[0]) if not changed(url, properties): # ETag didn't change, same content, just update headers api.collections().update(uuid=item["uuid"], body={"collection":{"properties": properties}}).execute() cr = arvados.collection.CollectionReader(item["portable_data_hash"], api_client=api) return "keep:%s/%s" % (item["portable_data_hash"], cr.keys()[0]) properties = {} req = requests.get(url, stream=True, allow_redirects=True) if req.status_code != 200: raise Exception("Failed to download '%s' got status %s " % (req.status_code, url)) remember_headers(url, properties, req.headers) logger.info("Downloading %s (%s bytes)", url, properties[url]["Content-Length"]) c = arvados.collection.Collection() if req.headers.get("Content-Disposition"): grp = re.search(r'filename=("((\"|[^"])+)"|([^][()<>@,;:\"/?={} ]+))', req.headers["Content-Disposition"]) if grp.groups(2): name = grp.groups(2) else: name = grp.groups(3) else: name = urlparse.urlparse(url).path.split("/")[-1] count = 0 start = time.time() checkpoint = start with c.open(name, "w") as f: for chunk in req.iter_content(chunk_size=1024): count += len(chunk) f.write(chunk) now = time.time() if (now - checkpoint) > 20: bps = (float(count)/float(now - start)) logger.info("%2.1f%% complete, %3.2f MiB/s, %1.0f seconds left", float(count * 100) / float(properties[url]["Content-Length"]), bps/(1024*1024), (int(properties[url]["Content-Length"])-count)/bps) checkpoint = now c.save_new(name="Downloaded from %s" % url, owner_uuid=project_uuid, ensure_unique_name=True) api.collections().update(uuid=c.manifest_locator(), body={"collection":{"properties": properties}}).execute() return "keep:%s/%s" % (c.portable_data_hash(), name)