import "run-test.cwlex" as run_test import "superuser-tok.cwl" as superuser_tok def workflow main( arvados_api_hosts string[], arvados_cluster_ids string[], superuser_tokens string[], arvbox_containers string[], fed_migrate="arv-federation-migrate", arvbox_bin File, refspec="master" ) { logincluster = run expr (arvados_cluster_ids) string (inputs.arvados_cluster_ids[0]) scatter arvbox_containers as container, arvados_cluster_ids as cluster_id, arvados_api_hosts as host do run workflow(logincluster, arvbox_bin, refspec) { run tool(container, host, arvbox_bin, refspec) { sh <<< set -xe export ARVBOX_CONTAINER="$(inputs.container)" $(inputs.arvbox_bin.path) pipe </dev/null ; do sleep 3 ; done ARVADOS_VIRTUAL_MACHINE_UUID=\$($(inputs.arvbox_bin.path) cat /var/lib/arvados-arvbox/vm-uuid) ARVADOS_API_TOKEN=\$($(inputs.arvbox_bin.path) cat /var/lib/arvados-arvbox/superuser_token) while ! curl --fail --insecure --silent -H "Authorization: Bearer $ARVADOS_API_TOKEN" https://$(inputs.host)/arvados/v1/virtual_machines/$ARVADOS_VIRTUAL_MACHINE_UUID >/dev/null ; do sleep 3 ; done >>> return container as d } supertok = superuser_tok(container, d) return supertok } report = run_test(arvados_api_hosts, superuser_tokens=supertok, fed_migrate) return supertok, report }