#!/usr/bin/perl
# -*- mode: perl; perl-indent-level: 2; indent-tabs-mode: nil; -*-

=head1 NAME

crunch-job: Execute job steps, save snapshots as requested, collate output.

=head1 SYNOPSIS

Obtain job details from Arvados, run tasks on compute nodes (typically
invoked by scheduler on controller):

 crunch-job --job x-y-z

Obtain job details from command line, run tasks on local machine
(typically invoked by application or developer on VM):

 crunch-job --job '{"script_version":"/path/to/tree","script":"scriptname",...}'

=head1 OPTIONS

=over

=item --force-unlock

If the job is already locked, steal the lock and run it anyway.

=item --git-dir

Path to .git directory where the specified commit is found.

=item --job-api-token

Arvados API authorization token to use during the course of the job.

=item --no-clear-tmp

Do not clear per-job/task temporary directories during initial job
setup. This can speed up development and debugging when running jobs
locally.

=back

=head1 RUNNING JOBS LOCALLY

crunch-job's log messages appear on stderr along with the job tasks'
stderr streams. The log is saved in Keep at each checkpoint and when
the job finishes.

If the job succeeds, the job's output locator is printed on stdout.

While the job is running, the following signals are accepted:

=over

=item control-C, SIGINT, SIGQUIT

Save a checkpoint, terminate any job tasks that are running, and stop.

=item SIGALRM

Save a checkpoint and continue.

=item SIGHUP

Refresh node allocation (i.e., check whether any nodes have been added
or unallocated) and attributes of the Job record that should affect
behavior (e.g., cancel job if cancelled_at becomes non-nil).

=back

=cut


use strict;
use POSIX ':sys_wait_h';
use POSIX qw(strftime);
use Fcntl qw(F_GETFL F_SETFL O_NONBLOCK);
use Arvados;
use Digest::MD5 qw(md5_hex);
use Getopt::Long;
use IPC::Open2;
use IO::Select;
use File::Temp;
use Fcntl ':flock';
use File::Path qw( make_path remove_tree );

use constant EX_TEMPFAIL => 75;

$ENV{"TMPDIR"} ||= "/tmp";
unless (defined $ENV{"CRUNCH_TMP"}) {
  $ENV{"CRUNCH_TMP"} = $ENV{"TMPDIR"} . "/crunch-job";
  if ($ENV{"USER"} ne "crunch" && $< != 0) {
    # use a tmp dir unique for my uid
    $ENV{"CRUNCH_TMP"} .= "-$<";
  }
}

# Create the tmp directory if it does not exist
if ( ! -d $ENV{"CRUNCH_TMP"} ) {
  make_path $ENV{"CRUNCH_TMP"} or die "Failed to create temporary working directory: " . $ENV{"CRUNCH_TMP"};
}

$ENV{"JOB_WORK"} = $ENV{"CRUNCH_TMP"} . "/work";
$ENV{"CRUNCH_INSTALL"} = "$ENV{CRUNCH_TMP}/opt";
$ENV{"CRUNCH_WORK"} = $ENV{"JOB_WORK"}; # deprecated
mkdir ($ENV{"JOB_WORK"});

my $force_unlock;
my $git_dir;
my $jobspec;
my $job_api_token;
my $no_clear_tmp;
my $resume_stash;
GetOptions('force-unlock' => \$force_unlock,
           'git-dir=s' => \$git_dir,
           'job=s' => \$jobspec,
           'job-api-token=s' => \$job_api_token,
           'no-clear-tmp' => \$no_clear_tmp,
           'resume-stash=s' => \$resume_stash,
    );

if (defined $job_api_token) {
  $ENV{ARVADOS_API_TOKEN} = $job_api_token;
}

my $have_slurm = exists $ENV{SLURM_JOBID} && exists $ENV{SLURM_NODELIST};
my $local_job = 0;


$SIG{'USR1'} = sub
{
  $main::ENV{CRUNCH_DEBUG} = 1;
};
$SIG{'USR2'} = sub
{
  $main::ENV{CRUNCH_DEBUG} = 0;
};



my $arv = Arvados->new('apiVersion' => 'v1');

my $User = $arv->{'users'}->{'current'}->execute;

my $Job;
my $job_id;
my $dbh;
my $sth;
if ($jobspec =~ /^[-a-z\d]+$/)
{
  # $jobspec is an Arvados UUID, not a JSON job specification
  $Job = $arv->{'jobs'}->{'get'}->execute('uuid' => $jobspec);
  if (!$force_unlock) {
    # Claim this job, and make sure nobody else does
    eval {
      # lock() sets is_locked_by_uuid and changes state to Running.
      $arv->{'jobs'}->{'lock'}->execute('uuid' => $Job->{'uuid'})
    };
    if ($@) {
      Log(undef, "Error while locking job, exiting ".EX_TEMPFAIL);
      exit EX_TEMPFAIL;
    };
  }
}
else
{
  $Job = JSON::decode_json($jobspec);

  if (!$resume_stash)
  {
    map { croak ("No $_ specified") unless $Job->{$_} }
    qw(script script_version script_parameters);
  }

  $Job->{'is_locked_by_uuid'} = $User->{'uuid'};
  $Job->{'started_at'} = gmtime;

  $Job = $arv->{'jobs'}->{'create'}->execute('job' => $Job);
}
$job_id = $Job->{'uuid'};

my $keep_logfile = $job_id . '.log.txt';
log_writer_start($keep_logfile);

$Job->{'runtime_constraints'} ||= {};
$Job->{'runtime_constraints'}->{'max_tasks_per_node'} ||= 0;
my $max_ncpus = $Job->{'runtime_constraints'}->{'max_tasks_per_node'};


Log (undef, "check slurm allocation");
my @slot;
my @node;
# Should use $ENV{SLURM_TASKS_PER_NODE} instead of sinfo? (eg. "4(x3),2,4(x2)")
my @sinfo;
if (!$have_slurm)
{
  my $localcpus = 0 + `grep -cw ^processor /proc/cpuinfo` || 1;
  push @sinfo, "$localcpus localhost";
}
if (exists $ENV{SLURM_NODELIST})
{
  push @sinfo, `sinfo -h --format='%c %N' --nodes=\Q$ENV{SLURM_NODELIST}\E`;
}
foreach (@sinfo)
{
  my ($ncpus, $slurm_nodelist) = split;
  $ncpus = $max_ncpus if $max_ncpus && $ncpus > $max_ncpus;

  my @nodelist;
  while ($slurm_nodelist =~ s/^([^\[,]+?(\[.*?\])?)(,|$)//)
  {
    my $nodelist = $1;
    if ($nodelist =~ /\[((\d+)(-(\d+))?(,(\d+)(-(\d+))?)*)\]/)
    {
      my $ranges = $1;
      foreach (split (",", $ranges))
      {
	my ($a, $b);
	if (/(\d+)-(\d+)/)
	{
	  $a = $1;
	  $b = $2;
	}
	else
	{
	  $a = $_;
	  $b = $_;
	}
	push @nodelist, map {
	  my $n = $nodelist;
	  $n =~ s/\[[-,\d]+\]/$_/;
	  $n;
	} ($a..$b);
      }
    }
    else
    {
      push @nodelist, $nodelist;
    }
  }
  foreach my $nodename (@nodelist)
  {
    Log (undef, "node $nodename - $ncpus slots");
    my $node = { name => $nodename,
		 ncpus => $ncpus,
		 losing_streak => 0,
		 hold_until => 0 };
    foreach my $cpu (1..$ncpus)
    {
      push @slot, { node => $node,
		    cpu => $cpu };
    }
  }
  push @node, @nodelist;
}



# Ensure that we get one jobstep running on each allocated node before
# we start overloading nodes with concurrent steps

@slot = sort { $a->{cpu} <=> $b->{cpu} } @slot;


$Job->update_attributes(
  'tasks_summary' => { 'failed' => 0,
                       'todo' => 1,
                       'running' => 0,
                       'done' => 0 });

Log (undef, "start");
$SIG{'INT'} = sub { $main::please_freeze = 1; };
$SIG{'QUIT'} = sub { $main::please_freeze = 1; };
$SIG{'TERM'} = \&croak;
$SIG{'TSTP'} = sub { $main::please_freeze = 1; };
$SIG{'ALRM'} = sub { $main::please_info = 1; };
$SIG{'CONT'} = sub { $main::please_continue = 1; };
$SIG{'HUP'} = sub { $main::please_refresh = 1; };

$main::please_freeze = 0;
$main::please_info = 0;
$main::please_continue = 0;
$main::please_refresh = 0;
my $jobsteps_must_output_keys = 0;	# becomes 1 when any task outputs a key

grep { $ENV{$1} = $2 if /^(NOCACHE.*?)=(.*)/ } split ("\n", $$Job{knobs});
$ENV{"CRUNCH_JOB_UUID"} = $job_id;
$ENV{"JOB_UUID"} = $job_id;


my @jobstep;
my @jobstep_todo = ();
my @jobstep_done = ();
my @jobstep_tomerge = ();
my $jobstep_tomerge_level = 0;
my $squeue_checked;
my $squeue_kill_checked;
my $output_in_keep = 0;
my $latest_refresh = scalar time;



if (defined $Job->{thawedfromkey})
{
  thaw ($Job->{thawedfromkey});
}
else
{
  my $first_task = $arv->{'job_tasks'}->{'create'}->execute('job_task' => {
    'job_uuid' => $Job->{'uuid'},
    'sequence' => 0,
    'qsequence' => 0,
    'parameters' => {},
                                                          });
  push @jobstep, { 'level' => 0,
		   'failures' => 0,
                   'arvados_task' => $first_task,
		 };
  push @jobstep_todo, 0;
}


if (!$have_slurm)
{
  must_lock_now("$ENV{CRUNCH_TMP}/.lock", "a job is already running here.");
}


my $build_script;
do {
  local $/ = undef;
  $build_script = <DATA>;
};
my $nodelist = join(",", @node);

if (!defined $no_clear_tmp) {
  # Clean out crunch_tmp/work, crunch_tmp/opt, crunch_tmp/src*
  Log (undef, "Clean work dirs");

  my $cleanpid = fork();
  if ($cleanpid == 0)
  {
    srun (["srun", "--nodelist=$nodelist", "-D", $ENV{'TMPDIR'}],
          ['bash', '-c', 'if mount | grep -q $JOB_WORK/; then for i in $JOB_WORK/*keep; do /bin/fusermount -z -u $i; done; fi; sleep 1; rm -rf $JOB_WORK $CRUNCH_TMP/opt $CRUNCH_TMP/src*']);
    exit (1);
  }
  while (1)
  {
    last if $cleanpid == waitpid (-1, WNOHANG);
    freeze_if_want_freeze ($cleanpid);
    select (undef, undef, undef, 0.1);
  }
  Log (undef, "Cleanup command exited ".exit_status_s($?));
}


my $git_archive;
if (!defined $git_dir && $Job->{'script_version'} =~ m{^/}) {
  # If we're in user-land (i.e., not called from crunch-dispatch)
  # script_version can be an absolute directory path, signifying we
  # should work straight out of that directory instead of using a git
  # commit.
  $ENV{"CRUNCH_SRC_COMMIT"} = $Job->{'script_version'};
  $ENV{"CRUNCH_SRC"} = $Job->{'script_version'};
}
else {
  $ENV{"CRUNCH_SRC"} = "$ENV{CRUNCH_TMP}/src";

  # Install requested code version
  Log (undef, "Looking for version ".$Job->{script_version}." from repository ".$Job->{repository});

  $ENV{"CRUNCH_SRC_COMMIT"} = $Job->{script_version};

  # If we're running under crunch-dispatch, it will have already
  # pulled the appropriate source tree into its own repository, and
  # given us that repo's path as $git_dir.
  #
  # If we're running a "local" job, we might have to fetch content
  # from a remote repository.
  #
  # (Currently crunch-dispatch gives a local path with --git-dir, but
  # we might as well accept URLs there too in case it changes its
  # mind.)
  my $repo = $git_dir || $Job->{'repository'};

  # Repository can be remote or local. If remote, we'll need to fetch it
  # to a local dir before doing `git log` et al.
  my $repo_location;

  if ($repo =~ m{://|^[^/]*:}) {
    # $repo is a git url we can clone, like git:// or https:// or
    # file:/// or [user@]host:repo.git. Note "user/name@host:foo" is
    # not recognized here because distinguishing that from a local
    # path is too fragile. If you really need something strange here,
    # use the ssh:// form.
    $repo_location = 'remote';
  } elsif ($repo =~ m{^\.*/}) {
    # $repo is a local path to a git index. We'll also resolve ../foo
    # to ../foo/.git if the latter is a directory. To help
    # disambiguate local paths from named hosted repositories, this
    # form must be given as ./ or ../ if it's a relative path.
    if (-d "$repo/.git") {
      $repo = "$repo/.git";
    }
    $repo_location = 'local';
  } else {
    # $repo is none of the above. It must be the name of a hosted
    # repository.
    my $arv_repo_list = $arv->{'repositories'}->{'list'}->execute(
      'filters' => [['name','=',$repo]]
        )->{'items'};
    my $n_found = scalar @{$arv_repo_list};
    if ($n_found > 0) {
      Log(undef, "Repository '$repo' -> "
          . join(", ", map { $_->{'uuid'} } @{$arv_repo_list}));
    }
    if ($n_found != 1) {
      croak("Error: Found $n_found repositories with name '$repo'.");
    }
    $repo = $arv_repo_list->[0]->{'fetch_url'};
    $repo_location = 'remote';
  }
  Log(undef, "Using $repo_location repository '$repo'");
  $ENV{"CRUNCH_SRC_URL"} = $repo;

  # Resolve given script_version (we'll call that $treeish here) to a
  # commit sha1 ($commit).
  my $treeish = $Job->{'script_version'};
  my $commit;
  if ($repo_location eq 'remote') {
    # We minimize excess object-fetching by re-using the same bare
    # repository in CRUNCH_TMP/.git for multiple crunch-jobs -- we
    # just keep adding remotes to it as needed.
    my $local_repo = $ENV{'CRUNCH_TMP'}."/.git";
    my $gitcmd = "git --git-dir=\Q$local_repo\E";

    # Set up our local repo for caching remote objects, making
    # archives, etc.
    if (!-d $local_repo) {
      make_path($local_repo) or croak("Error: could not create $local_repo");
    }
    # This works (exits 0 and doesn't delete fetched objects) even
    # if $local_repo is already initialized:
    `$gitcmd init --bare`;
    if ($?) {
      croak("Error: $gitcmd init --bare exited ".exit_status_s($?));
    }

    # If $treeish looks like a hash (or abbrev hash) we look it up in
    # our local cache first, since that's cheaper. (We don't want to
    # do that with tags/branches though -- those change over time, so
    # they should always be resolved by the remote repo.)
    if ($treeish =~ /^[0-9a-f]{3,40}$/s) {
      # Hide stderr because it's normal for this to fail:
      my $sha1 = `$gitcmd rev-list -n1 ''\Q$treeish\E 2>/dev/null`;
      if ($? == 0 &&
          $sha1 =~ /^$treeish/ && # Don't use commit 123 @ branch abc!
          $sha1 =~ /^([0-9a-f]{40})$/s) {
        $commit = $1;
        Log(undef, "Commit $commit already present in $local_repo");
      }
    }

    if (!defined $commit) {
      # If $treeish isn't just a hash or abbrev hash, or isn't here
      # yet, we need to fetch the remote to resolve it correctly.

      # First, remove all local heads. This prevents a name that does
      # not exist on the remote from resolving to (or colliding with)
      # a previously fetched branch or tag (possibly from a different
      # remote).
      remove_tree("$local_repo/refs/heads", {keep_root => 1});

      Log(undef, "Fetching objects from $repo to $local_repo");
      `$gitcmd fetch --no-progress --tags ''\Q$repo\E \Q+refs/heads/*:refs/heads/*\E`;
      if ($?) {
        croak("Error: `$gitcmd fetch` exited ".exit_status_s($?));
      }
    }

    # Now that the data is all here, we will use our local repo for
    # the rest of our git activities.
    $repo = $local_repo;
  }

  my $gitcmd = "git --git-dir=\Q$repo\E";
  my $sha1 = `$gitcmd rev-list -n1 ''\Q$treeish\E`;
  unless ($? == 0 && $sha1 =~ /^([0-9a-f]{40})$/) {
    croak("`$gitcmd rev-list` exited "
          .exit_status_s($?)
          .", '$treeish' not found. Giving up.");
  }
  $commit = $1;
  Log(undef, "Version $treeish is commit $commit");

  if ($commit ne $Job->{'script_version'}) {
    # Record the real commit id in the database, frozentokey, logs,
    # etc. -- instead of an abbreviation or a branch name which can
    # become ambiguous or point to a different commit in the future.
    if (!$Job->update_attributes('script_version' => $commit)) {
      croak("Error: failed to update job's script_version attribute");
    }
  }

  $ENV{"CRUNCH_SRC_COMMIT"} = $commit;
  $git_archive = `$gitcmd archive ''\Q$commit\E`;
  if ($?) {
    croak("Error: $gitcmd archive exited ".exit_status_s($?));
  }
}

if (!defined $git_archive) {
  Log(undef, "Skip install phase (no git archive)");
  if ($have_slurm) {
    Log(undef, "Warning: This probably means workers have no source tree!");
  }
}
else {
  Log(undef, "Run install script on all workers");

  my @srunargs = ("srun",
                  "--nodelist=$nodelist",
                  "-D", $ENV{'TMPDIR'}, "--job-name=$job_id");
  my @execargs = ("sh", "-c",
                  "mkdir -p $ENV{CRUNCH_INSTALL} && cd $ENV{CRUNCH_TMP} && perl -");

  # Note: this section is almost certainly unnecessary if we're
  # running tasks in docker containers.
  my $installpid = fork();
  if ($installpid == 0)
  {
    srun (\@srunargs, \@execargs, {}, $build_script . $git_archive);
    exit (1);
  }
  while (1)
  {
    last if $installpid == waitpid (-1, WNOHANG);
    freeze_if_want_freeze ($installpid);
    select (undef, undef, undef, 0.1);
  }
  Log (undef, "Install script exited ".exit_status_s($?));
}

if (!$have_slurm)
{
  # Grab our lock again (we might have deleted and re-created CRUNCH_TMP above)
  must_lock_now("$ENV{CRUNCH_TMP}/.lock", "a job is already running here.");
}

# If this job requires a Docker image, install that.
my $docker_bin = "/usr/bin/docker.io";
my ($docker_locator, $docker_stream, $docker_hash);
if ($docker_locator = $Job->{docker_image_locator}) {
  ($docker_stream, $docker_hash) = find_docker_image($docker_locator);
  if (!$docker_hash)
  {
    croak("No Docker image hash found from locator $docker_locator");
  }
  $docker_stream =~ s/^\.//;
  my $docker_install_script = qq{
if ! $docker_bin images -q --no-trunc | grep -qxF \Q$docker_hash\E; then
    arv-get \Q$docker_locator$docker_stream/$docker_hash.tar\E | $docker_bin load
fi
};
  my $docker_pid = fork();
  if ($docker_pid == 0)
  {
    srun (["srun", "--nodelist=" . join(',', @node)],
          ["/bin/sh", "-ec", $docker_install_script]);
    exit ($?);
  }
  while (1)
  {
    last if $docker_pid == waitpid (-1, WNOHANG);
    freeze_if_want_freeze ($docker_pid);
    select (undef, undef, undef, 0.1);
  }
  if ($? != 0)
  {
    croak("Installing Docker image from $docker_locator exited "
          .exit_status_s($?));
  }
}

foreach (qw (script script_version script_parameters runtime_constraints))
{
  Log (undef,
       "$_ " .
       (ref($Job->{$_}) ? JSON::encode_json($Job->{$_}) : $Job->{$_}));
}
foreach (split (/\n/, $Job->{knobs}))
{
  Log (undef, "knob " . $_);
}



$main::success = undef;



ONELEVEL:

my $thisround_succeeded = 0;
my $thisround_failed = 0;
my $thisround_failed_multiple = 0;

@jobstep_todo = sort { $jobstep[$a]->{level} <=> $jobstep[$b]->{level}
		       or $a <=> $b } @jobstep_todo;
my $level = $jobstep[$jobstep_todo[0]]->{level};
Log (undef, "start level $level");



my %proc;
my @freeslot = (0..$#slot);
my @holdslot;
my %reader;
my $progress_is_dirty = 1;
my $progress_stats_updated = 0;

update_progress_stats();



THISROUND:
for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
{
  my $id = $jobstep_todo[$todo_ptr];
  my $Jobstep = $jobstep[$id];
  if ($Jobstep->{level} != $level)
  {
    next;
  }

  pipe $reader{$id}, "writer" or croak ($!);
  my $flags = fcntl ($reader{$id}, F_GETFL, 0) or croak ($!);
  fcntl ($reader{$id}, F_SETFL, $flags | O_NONBLOCK) or croak ($!);

  my $childslot = $freeslot[0];
  my $childnode = $slot[$childslot]->{node};
  my $childslotname = join (".",
			    $slot[$childslot]->{node}->{name},
			    $slot[$childslot]->{cpu});
  my $childpid = fork();
  if ($childpid == 0)
  {
    $SIG{'INT'} = 'DEFAULT';
    $SIG{'QUIT'} = 'DEFAULT';
    $SIG{'TERM'} = 'DEFAULT';

    foreach (values (%reader))
    {
      close($_);
    }
    fcntl ("writer", F_SETFL, 0) or croak ($!); # no close-on-exec
    open(STDOUT,">&writer");
    open(STDERR,">&writer");

    undef $dbh;
    undef $sth;

    delete $ENV{"GNUPGHOME"};
    $ENV{"TASK_UUID"} = $Jobstep->{'arvados_task'}->{'uuid'};
    $ENV{"TASK_QSEQUENCE"} = $id;
    $ENV{"TASK_SEQUENCE"} = $level;
    $ENV{"JOB_SCRIPT"} = $Job->{script};
    while (my ($param, $value) = each %{$Job->{script_parameters}}) {
      $param =~ tr/a-z/A-Z/;
      $ENV{"JOB_PARAMETER_$param"} = $value;
    }
    $ENV{"TASK_SLOT_NODE"} = $slot[$childslot]->{node}->{name};
    $ENV{"TASK_SLOT_NUMBER"} = $slot[$childslot]->{cpu};
    $ENV{"TASK_WORK"} = $ENV{"JOB_WORK"}."/$id.$$";
    $ENV{"HOME"} = $ENV{"TASK_WORK"};
    $ENV{"TASK_KEEPMOUNT"} = $ENV{"TASK_WORK"}.".keep";
    $ENV{"TASK_TMPDIR"} = $ENV{"TASK_WORK"}; # deprecated
    $ENV{"CRUNCH_NODE_SLOTS"} = $slot[$childslot]->{node}->{ncpus};
    $ENV{"PATH"} = $ENV{"CRUNCH_INSTALL"} . "/bin:" . $ENV{"PATH"};

    $ENV{"GZIP"} = "-n";

    my @srunargs = (
      "srun",
      "--nodelist=".$childnode->{name},
      qw(-n1 -c1 -N1 -D), $ENV{'TMPDIR'},
      "--job-name=$job_id.$id.$$",
	);
    my $build_script_to_send = "";
    my $command =
	"if [ -e $ENV{TASK_WORK} ]; then rm -rf $ENV{TASK_WORK}; fi; "
        ."mkdir -p $ENV{CRUNCH_TMP} $ENV{JOB_WORK} $ENV{TASK_WORK} $ENV{TASK_KEEPMOUNT} "
	."&& cd $ENV{CRUNCH_TMP} ";
    if ($build_script)
    {
      $build_script_to_send = $build_script;
      $command .=
	  "&& perl -";
    }
    $command .= "&& exec arv-mount --by-id --allow-other $ENV{TASK_KEEPMOUNT} --exec ";
    if ($docker_hash)
    {
      $command .= "crunchstat -cgroup-root=/sys/fs/cgroup -cgroup-parent=docker -cgroup-cid=$ENV{TASK_WORK}/docker.cid -poll=10000 ";
      $command .= "$docker_bin run --rm=true --attach=stdout --attach=stderr --user=crunch --cidfile=$ENV{TASK_WORK}/docker.cid ";
      # Dynamically configure the container to use the host system as its
      # DNS server.  Get the host's global addresses from the ip command,
      # and turn them into docker --dns options using gawk.
      $command .=
          q{$(ip -o address show scope global |
              gawk 'match($4, /^([0-9\.:]+)\//, x){print "--dns", x[1]}') };
      $command .= "--volume=\Q$ENV{CRUNCH_SRC}:/tmp/crunch-src:ro\E ";
      $command .= "--volume=\Q$ENV{TASK_KEEPMOUNT}:/keep:ro\E ";
      $command .= "--env=\QHOME=/home/crunch\E ";
      while (my ($env_key, $env_val) = each %ENV)
      {
        if ($env_key =~ /^(ARVADOS|JOB|TASK)_/) {
          if ($env_key eq "TASK_WORK") {
            $command .= "--env=\QTASK_WORK=/tmp/crunch-job\E ";
          }
          elsif ($env_key eq "TASK_KEEPMOUNT") {
            $command .= "--env=\QTASK_KEEPMOUNT=/keep\E ";
          }
          else {
            $command .= "--env=\Q$env_key=$env_val\E ";
          }
        }
      }
      $command .= "--env=\QCRUNCH_NODE_SLOTS=$ENV{CRUNCH_NODE_SLOTS}\E ";
      $command .= "--env=\QCRUNCH_SRC=/tmp/crunch-src\E ";
      $command .= "\Q$docker_hash\E ";
      $command .= "stdbuf --output=0 --error=0 ";
      $command .= "/tmp/crunch-src/crunch_scripts/" . $Job->{"script"};
    } else {
      # Non-docker run
      $command .= "crunchstat -cgroup-root=/sys/fs/cgroup -poll=10000 ";
      $command .= "stdbuf --output=0 --error=0 ";
      $command .= "$ENV{CRUNCH_SRC}/crunch_scripts/" . $Job->{"script"};
    }

    my @execargs = ('bash', '-c', $command);
    srun (\@srunargs, \@execargs, undef, $build_script_to_send);
    # exec() failed, we assume nothing happened.
    Log(undef, "srun() failed on build script");
    die;
  }
  close("writer");
  if (!defined $childpid)
  {
    close $reader{$id};
    delete $reader{$id};
    next;
  }
  shift @freeslot;
  $proc{$childpid} = { jobstep => $id,
		       time => time,
		       slot => $childslot,
		       jobstepname => "$job_id.$id.$childpid",
		     };
  croak ("assert failed: \$slot[$childslot]->{'pid'} exists") if exists $slot[$childslot]->{pid};
  $slot[$childslot]->{pid} = $childpid;

  Log ($id, "job_task ".$Jobstep->{'arvados_task'}->{'uuid'});
  Log ($id, "child $childpid started on $childslotname");
  $Jobstep->{starttime} = time;
  $Jobstep->{node} = $childnode->{name};
  $Jobstep->{slotindex} = $childslot;
  delete $Jobstep->{stderr};
  delete $Jobstep->{finishtime};

  $Jobstep->{'arvados_task'}->{started_at} = strftime "%Y-%m-%dT%H:%M:%SZ", gmtime($Jobstep->{starttime});
  $Jobstep->{'arvados_task'}->save;

  splice @jobstep_todo, $todo_ptr, 1;
  --$todo_ptr;

  $progress_is_dirty = 1;

  while (!@freeslot
	 ||
	 (@slot > @freeslot && $todo_ptr+1 > $#jobstep_todo))
  {
    last THISROUND if $main::please_freeze;
    if ($main::please_info)
    {
      $main::please_info = 0;
      freeze();
      collate_output();
      save_meta(1);
      update_progress_stats();
    }
    my $gotsome
	= readfrompipes ()
	+ reapchildren ();
    if (!$gotsome)
    {
      check_refresh_wanted();
      check_squeue();
      update_progress_stats();
      select (undef, undef, undef, 0.1);
    }
    elsif (time - $progress_stats_updated >= 30)
    {
      update_progress_stats();
    }
    if (($thisround_failed_multiple >= 8 && $thisround_succeeded == 0) ||
	($thisround_failed_multiple >= 16 && $thisround_failed_multiple > $thisround_succeeded))
    {
      my $message = "Repeated failure rate too high ($thisround_failed_multiple/"
	  .($thisround_failed+$thisround_succeeded)
	  .") -- giving up on this round";
      Log (undef, $message);
      last THISROUND;
    }

    # move slots from freeslot to holdslot (or back to freeslot) if necessary
    for (my $i=$#freeslot; $i>=0; $i--) {
      if ($slot[$freeslot[$i]]->{node}->{hold_until} > scalar time) {
	push @holdslot, (splice @freeslot, $i, 1);
      }
    }
    for (my $i=$#holdslot; $i>=0; $i--) {
      if ($slot[$holdslot[$i]]->{node}->{hold_until} <= scalar time) {
	push @freeslot, (splice @holdslot, $i, 1);
      }
    }

    # give up if no nodes are succeeding
    if (!grep { $_->{node}->{losing_streak} == 0 &&
                    $_->{node}->{hold_count} < 4 } @slot) {
      my $message = "Every node has failed -- giving up on this round";
      Log (undef, $message);
      last THISROUND;
    }
  }
}


push @freeslot, splice @holdslot;
map { $slot[$freeslot[$_]]->{node}->{losing_streak} = 0 } (0..$#freeslot);


Log (undef, "wait for last ".(scalar keys %proc)." children to finish");
while (%proc)
{
  if ($main::please_continue) {
    $main::please_continue = 0;
    goto THISROUND;
  }
  $main::please_info = 0, freeze(), collate_output(), save_meta(1) if $main::please_info;
  readfrompipes ();
  if (!reapchildren())
  {
    check_refresh_wanted();
    check_squeue();
    update_progress_stats();
    select (undef, undef, undef, 0.1);
    killem (keys %proc) if $main::please_freeze;
  }
}

update_progress_stats();
freeze_if_want_freeze();


if (!defined $main::success)
{
  if (@jobstep_todo &&
      $thisround_succeeded == 0 &&
      ($thisround_failed == 0 || $thisround_failed > 4))
  {
    my $message = "stop because $thisround_failed tasks failed and none succeeded";
    Log (undef, $message);
    $main::success = 0;
  }
  if (!@jobstep_todo)
  {
    $main::success = 1;
  }
}

goto ONELEVEL if !defined $main::success;


release_allocation();
freeze();
my $collated_output = &collate_output();

if (!$collated_output) {
  Log(undef, "output undef");
}
else {
  eval {
    open(my $orig_manifest, '-|', 'arv-get', $collated_output)
        or die "failed to get collated manifest: $!";
    my $orig_manifest_text = '';
    while (my $manifest_line = <$orig_manifest>) {
      $orig_manifest_text .= $manifest_line;
    }
    my $output = $arv->{'collections'}->{'create'}->execute('collection' => {
      'manifest_text' => $orig_manifest_text,
    });
    Log(undef, "output uuid " . $output->{uuid});
    Log(undef, "output hash " . $output->{portable_data_hash});
    $Job->update_attributes('output' => $output->{portable_data_hash});
  };
  if ($@) {
    Log (undef, "Failed to register output manifest: $@");
  }
}

Log (undef, "finish");

save_meta();

my $final_state;
if ($collated_output && $main::success) {
  $final_state = 'Complete';
} else {
  $final_state = 'Failed';
}
$Job->update_attributes('state' => $final_state);

exit (($final_state eq 'Complete') ? 0 : 1);



sub update_progress_stats
{
  $progress_stats_updated = time;
  return if !$progress_is_dirty;
  my ($todo, $done, $running) = (scalar @jobstep_todo,
				 scalar @jobstep_done,
				 scalar @slot - scalar @freeslot - scalar @holdslot);
  $Job->{'tasks_summary'} ||= {};
  $Job->{'tasks_summary'}->{'todo'} = $todo;
  $Job->{'tasks_summary'}->{'done'} = $done;
  $Job->{'tasks_summary'}->{'running'} = $running;
  $Job->update_attributes('tasks_summary' => $Job->{'tasks_summary'});
  Log (undef, "status: $done done, $running running, $todo todo");
  $progress_is_dirty = 0;
}



sub reapchildren
{
  my $pid = waitpid (-1, WNOHANG);
  return 0 if $pid <= 0;

  my $whatslot = ($slot[$proc{$pid}->{slot}]->{node}->{name}
		  . "."
		  . $slot[$proc{$pid}->{slot}]->{cpu});
  my $jobstepid = $proc{$pid}->{jobstep};
  my $elapsed = time - $proc{$pid}->{time};
  my $Jobstep = $jobstep[$jobstepid];

  my $childstatus = $?;
  my $exitvalue = $childstatus >> 8;
  my $exitinfo = "exit ".exit_status_s($childstatus);
  $Jobstep->{'arvados_task'}->reload;
  my $task_success = $Jobstep->{'arvados_task'}->{success};

  Log ($jobstepid, "child $pid on $whatslot $exitinfo success=$task_success");

  if (!defined $task_success) {
    # task did not indicate one way or the other --> fail
    $Jobstep->{'arvados_task'}->{success} = 0;
    $Jobstep->{'arvados_task'}->save;
    $task_success = 0;
  }

  if (!$task_success)
  {
    my $temporary_fail;
    $temporary_fail ||= $Jobstep->{node_fail};
    $temporary_fail ||= ($exitvalue == 111);

    ++$thisround_failed;
    ++$thisround_failed_multiple if $Jobstep->{'failures'} >= 1;

    # Check for signs of a failed or misconfigured node
    if (++$slot[$proc{$pid}->{slot}]->{node}->{losing_streak} >=
	2+$slot[$proc{$pid}->{slot}]->{node}->{ncpus}) {
      # Don't count this against jobstep failure thresholds if this
      # node is already suspected faulty and srun exited quickly
      if ($slot[$proc{$pid}->{slot}]->{node}->{hold_until} &&
	  $elapsed < 5) {
	Log ($jobstepid, "blaming failure on suspect node " .
             $slot[$proc{$pid}->{slot}]->{node}->{name});
        $temporary_fail ||= 1;
      }
      ban_node_by_slot($proc{$pid}->{slot});
    }

    Log ($jobstepid, sprintf('failure (#%d, %s) after %d seconds',
                             ++$Jobstep->{'failures'},
                             $temporary_fail ? 'temporary ' : 'permanent',
                             $elapsed));

    if (!$temporary_fail || $Jobstep->{'failures'} >= 3) {
      # Give up on this task, and the whole job
      $main::success = 0;
      $main::please_freeze = 1;
    }
    # Put this task back on the todo queue
    push @jobstep_todo, $jobstepid;
    $Job->{'tasks_summary'}->{'failed'}++;
  }
  else
  {
    ++$thisround_succeeded;
    $slot[$proc{$pid}->{slot}]->{node}->{losing_streak} = 0;
    $slot[$proc{$pid}->{slot}]->{node}->{hold_until} = 0;
    push @jobstep_done, $jobstepid;
    Log ($jobstepid, "success in $elapsed seconds");
  }
  $Jobstep->{exitcode} = $childstatus;
  $Jobstep->{finishtime} = time;
  $Jobstep->{'arvados_task'}->{finished_at} = strftime "%Y-%m-%dT%H:%M:%SZ", gmtime($Jobstep->{finishtime});
  $Jobstep->{'arvados_task'}->save;
  process_stderr ($jobstepid, $task_success);
  Log ($jobstepid, "output " . $Jobstep->{'arvados_task'}->{output});

  close $reader{$jobstepid};
  delete $reader{$jobstepid};
  delete $slot[$proc{$pid}->{slot}]->{pid};
  push @freeslot, $proc{$pid}->{slot};
  delete $proc{$pid};

  if ($task_success) {
    # Load new tasks
    my $newtask_list = [];
    my $newtask_results;
    do {
      $newtask_results = $arv->{'job_tasks'}->{'list'}->execute(
        'where' => {
          'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid}
        },
        'order' => 'qsequence',
        'offset' => scalar(@$newtask_list),
      );
      push(@$newtask_list, @{$newtask_results->{items}});
    } while (@{$newtask_results->{items}});
    foreach my $arvados_task (@$newtask_list) {
      my $jobstep = {
        'level' => $arvados_task->{'sequence'},
        'failures' => 0,
        'arvados_task' => $arvados_task
      };
      push @jobstep, $jobstep;
      push @jobstep_todo, $#jobstep;
    }
  }

  $progress_is_dirty = 1;
  1;
}

sub check_refresh_wanted
{
  my @stat = stat $ENV{"CRUNCH_REFRESH_TRIGGER"};
  if (@stat && $stat[9] > $latest_refresh) {
    $latest_refresh = scalar time;
    my $Job2 = $arv->{'jobs'}->{'get'}->execute('uuid' => $jobspec);
    for my $attr ('cancelled_at',
                  'cancelled_by_user_uuid',
                  'cancelled_by_client_uuid',
                  'state') {
      $Job->{$attr} = $Job2->{$attr};
    }
    if ($Job->{'state'} ne "Running") {
      if ($Job->{'state'} eq "Cancelled") {
        Log (undef, "Job cancelled at " . $Job->{'cancelled_at'} . " by user " . $Job->{'cancelled_by_user_uuid'});
      } else {
        Log (undef, "Job state unexpectedly changed to " . $Job->{'state'});
      }
      $main::success = 0;
      $main::please_freeze = 1;
    }
  }
}

sub check_squeue
{
  # return if the kill list was checked <4 seconds ago
  if (defined $squeue_kill_checked && $squeue_kill_checked > time - 4)
  {
    return;
  }
  $squeue_kill_checked = time;

  # use killem() on procs whose killtime is reached
  for (keys %proc)
  {
    if (exists $proc{$_}->{killtime}
	&& $proc{$_}->{killtime} <= time)
    {
      killem ($_);
    }
  }

  # return if the squeue was checked <60 seconds ago
  if (defined $squeue_checked && $squeue_checked > time - 60)
  {
    return;
  }
  $squeue_checked = time;

  if (!$have_slurm)
  {
    # here is an opportunity to check for mysterious problems with local procs
    return;
  }

  # get a list of steps still running
  my @squeue = `squeue -s -h -o '%i %j' && echo ok`;
  chop @squeue;
  if ($squeue[-1] ne "ok")
  {
    return;
  }
  pop @squeue;

  # which of my jobsteps are running, according to squeue?
  my %ok;
  foreach (@squeue)
  {
    if (/^(\d+)\.(\d+) (\S+)/)
    {
      if ($1 eq $ENV{SLURM_JOBID})
      {
	$ok{$3} = 1;
      }
    }
  }

  # which of my active child procs (>60s old) were not mentioned by squeue?
  foreach (keys %proc)
  {
    if ($proc{$_}->{time} < time - 60
	&& !exists $ok{$proc{$_}->{jobstepname}}
	&& !exists $proc{$_}->{killtime})
    {
      # kill this proc if it hasn't exited in 30 seconds
      $proc{$_}->{killtime} = time + 30;
    }
  }
}


sub release_allocation
{
  if ($have_slurm)
  {
    Log (undef, "release job allocation");
    system "scancel $ENV{SLURM_JOBID}";
  }
}


sub readfrompipes
{
  my $gotsome = 0;
  foreach my $job (keys %reader)
  {
    my $buf;
    while (0 < sysread ($reader{$job}, $buf, 8192))
    {
      print STDERR $buf if $ENV{CRUNCH_DEBUG};
      $jobstep[$job]->{stderr} .= $buf;
      preprocess_stderr ($job);
      if (length ($jobstep[$job]->{stderr}) > 16384)
      {
	substr ($jobstep[$job]->{stderr}, 0, 8192) = "";
      }
      $gotsome = 1;
    }
  }
  return $gotsome;
}


sub preprocess_stderr
{
  my $job = shift;

  while ($jobstep[$job]->{stderr} =~ /^(.*?)\n/) {
    my $line = $1;
    substr $jobstep[$job]->{stderr}, 0, 1+length($line), "";
    Log ($job, "stderr $line");
    if ($line =~ /srun: error: (SLURM job $ENV{SLURM_JOB_ID} has expired|Unable to confirm allocation for job $ENV{SLURM_JOB_ID})/) {
      # whoa.
      $main::please_freeze = 1;
    }
    elsif ($line =~ /srun: error: (Node failure on|Unable to create job step) /) {
      $jobstep[$job]->{node_fail} = 1;
      ban_node_by_slot($jobstep[$job]->{slotindex});
    }
  }
}


sub process_stderr
{
  my $job = shift;
  my $task_success = shift;
  preprocess_stderr ($job);

  map {
    Log ($job, "stderr $_");
  } split ("\n", $jobstep[$job]->{stderr});
}

sub fetch_block
{
  my $hash = shift;
  my ($keep, $child_out, $output_block);

  my $cmd = "arv-get \Q$hash\E";
  open($keep, '-|', $cmd) or die "fetch_block: $cmd: $!";
  $output_block = '';
  while (1) {
    my $buf;
    my $bytes = sysread($keep, $buf, 1024 * 1024);
    if (!defined $bytes) {
      die "reading from arv-get: $!";
    } elsif ($bytes == 0) {
      # sysread returns 0 at the end of the pipe.
      last;
    } else {
      # some bytes were read into buf.
      $output_block .= $buf;
    }
  }
  close $keep;
  return $output_block;
}

sub collate_output
{
  Log (undef, "collate");

  my ($child_out, $child_in);
  my $pid = open2($child_out, $child_in, 'arv-put', '--raw',
                  '--retries', put_retry_count());
  my $joboutput;
  for (@jobstep)
  {
    next if (!exists $_->{'arvados_task'}->{'output'} ||
             !$_->{'arvados_task'}->{'success'});
    my $output = $_->{'arvados_task'}->{output};
    if ($output !~ /^[0-9a-f]{32}(\+\S+)*$/)
    {
      $output_in_keep ||= $output =~ / [0-9a-f]{32}\S*\+K/;
      print $child_in $output;
    }
    elsif (@jobstep == 1)
    {
      $joboutput = $output;
      last;
    }
    elsif (defined (my $outblock = fetch_block ($output)))
    {
      $output_in_keep ||= $outblock =~ / [0-9a-f]{32}\S*\+K/;
      print $child_in $outblock;
    }
    else
    {
      Log (undef, "XXX fetch_block($output) failed XXX");
      $main::success = 0;
    }
  }
  $child_in->close;

  if (!defined $joboutput) {
    my $s = IO::Select->new($child_out);
    if ($s->can_read(120)) {
      sysread($child_out, $joboutput, 64 * 1024 * 1024);
      chomp($joboutput);
      # TODO: Ensure exit status == 0.
    } else {
      Log (undef, "timed out reading from 'arv-put'");
    }
  }
  # TODO: kill $pid instead of waiting, now that we've decided to
  # ignore further output.
  waitpid($pid, 0);

  return $joboutput;
}


sub killem
{
  foreach (@_)
  {
    my $sig = 2;		# SIGINT first
    if (exists $proc{$_}->{"sent_$sig"} &&
	time - $proc{$_}->{"sent_$sig"} > 4)
    {
      $sig = 15;		# SIGTERM if SIGINT doesn't work
    }
    if (exists $proc{$_}->{"sent_$sig"} &&
	time - $proc{$_}->{"sent_$sig"} > 4)
    {
      $sig = 9;			# SIGKILL if SIGTERM doesn't work
    }
    if (!exists $proc{$_}->{"sent_$sig"})
    {
      Log ($proc{$_}->{jobstep}, "sending 2x signal $sig to pid $_");
      kill $sig, $_;
      select (undef, undef, undef, 0.1);
      if ($sig == 2)
      {
	kill $sig, $_;	   # srun wants two SIGINT to really interrupt
      }
      $proc{$_}->{"sent_$sig"} = time;
      $proc{$_}->{"killedafter"} = time - $proc{$_}->{"time"};
    }
  }
}


sub fhbits
{
  my($bits);
  for (@_) {
    vec($bits,fileno($_),1) = 1;
  }
  $bits;
}


# Send log output to Keep via arv-put.
#
# $log_pipe_in and $log_pipe_out are the input and output filehandles to the arv-put pipe.
# $log_pipe_pid is the pid of the arv-put subprocess.
#
# The only functions that should access these variables directly are:
#
# log_writer_start($logfilename)
#     Starts an arv-put pipe, reading data on stdin and writing it to
#     a $logfilename file in an output collection.
#
# log_writer_send($txt)
#     Writes $txt to the output log collection.
#
# log_writer_finish()
#     Closes the arv-put pipe and returns the output that it produces.
#
# log_writer_is_active()
#     Returns a true value if there is currently a live arv-put
#     process, false otherwise.
#
my ($log_pipe_in, $log_pipe_out, $log_pipe_pid);

sub log_writer_start($)
{
  my $logfilename = shift;
  $log_pipe_pid = open2($log_pipe_out, $log_pipe_in,
                        'arv-put', '--portable-data-hash',
                        '--retries', '3',
                        '--filename', $logfilename,
                        '-');
}

sub log_writer_send($)
{
  my $txt = shift;
  print $log_pipe_in $txt;
}

sub log_writer_finish()
{
  return unless $log_pipe_pid;

  close($log_pipe_in);
  my $arv_put_output;

  my $s = IO::Select->new($log_pipe_out);
  if ($s->can_read(120)) {
    sysread($log_pipe_out, $arv_put_output, 1024);
    chomp($arv_put_output);
  } else {
    Log (undef, "timed out reading from 'arv-put'");
  }

  waitpid($log_pipe_pid, 0);
  $log_pipe_pid = $log_pipe_in = $log_pipe_out = undef;
  if ($?) {
    Log("log_writer_finish: arv-put exited ".exit_status_s($?))
  }

  return $arv_put_output;
}

sub log_writer_is_active() {
  return $log_pipe_pid;
}

sub Log				# ($jobstep_id, $logmessage)
{
  if ($_[1] =~ /\n/) {
    for my $line (split (/\n/, $_[1])) {
      Log ($_[0], $line);
    }
    return;
  }
  my $fh = select STDERR; $|=1; select $fh;
  my $message = sprintf ("%s %d %s %s", $job_id, $$, @_);
  $message =~ s{([^ -\176])}{"\\" . sprintf ("%03o", ord($1))}ge;
  $message .= "\n";
  my $datetime;
  if (log_writer_is_active() || -t STDERR) {
    my @gmtime = gmtime;
    $datetime = sprintf ("%04d-%02d-%02d_%02d:%02d:%02d",
			 $gmtime[5]+1900, $gmtime[4]+1, @gmtime[3,2,1,0]);
  }
  print STDERR ((-t STDERR) ? ($datetime." ".$message) : $message);

  if (log_writer_is_active()) {
    log_writer_send($datetime . " " . $message);
  }
}


sub croak
{
  my ($package, $file, $line) = caller;
  my $message = "@_ at $file line $line\n";
  Log (undef, $message);
  freeze() if @jobstep_todo;
  collate_output() if @jobstep_todo;
  cleanup() if $Job;
  save_meta() if log_writer_is_active();
  die;
}


sub cleanup
{
  if ($Job->{'state'} eq 'Cancelled') {
    $Job->update_attributes('finished_at' => scalar gmtime);
  } else {
    $Job->update_attributes('state' => 'Failed');
  }
}


sub save_meta
{
  my $justcheckpoint = shift; # false if this will be the last meta saved
  return if $justcheckpoint;  # checkpointing is not relevant post-Warehouse.pm

  my $loglocator = log_writer_finish();
  Log (undef, "log manifest is $loglocator");
  $Job->{'log'} = $loglocator;
  $Job->update_attributes('log', $loglocator);
}


sub freeze_if_want_freeze
{
  if ($main::please_freeze)
  {
    release_allocation();
    if (@_)
    {
      # kill some srun procs before freeze+stop
      map { $proc{$_} = {} } @_;
      while (%proc)
      {
	killem (keys %proc);
	select (undef, undef, undef, 0.1);
	my $died;
	while (($died = waitpid (-1, WNOHANG)) > 0)
	{
	  delete $proc{$died};
	}
      }
    }
    freeze();
    collate_output();
    cleanup();
    save_meta();
    exit 1;
  }
}


sub freeze
{
  Log (undef, "Freeze not implemented");
  return;
}


sub thaw
{
  croak ("Thaw not implemented");
}


sub freezequote
{
  my $s = shift;
  $s =~ s/\\/\\\\/g;
  $s =~ s/\n/\\n/g;
  return $s;
}


sub freezeunquote
{
  my $s = shift;
  $s =~ s{\\(.)}{$1 eq "n" ? "\n" : $1}ge;
  return $s;
}


sub srun
{
  my $srunargs = shift;
  my $execargs = shift;
  my $opts = shift || {};
  my $stdin = shift;
  my $args = $have_slurm ? [@$srunargs, @$execargs] : $execargs;
  print STDERR (join (" ",
		      map { / / ? "'$_'" : $_ }
		      (@$args)),
		"\n")
      if $ENV{CRUNCH_DEBUG};

  if (defined $stdin) {
    my $child = open STDIN, "-|";
    defined $child or die "no fork: $!";
    if ($child == 0) {
      print $stdin or die $!;
      close STDOUT or die $!;
      exit 0;
    }
  }

  return system (@$args) if $opts->{fork};

  exec @$args;
  warn "ENV size is ".length(join(" ",%ENV));
  die "exec failed: $!: @$args";
}


sub ban_node_by_slot {
  # Don't start any new jobsteps on this node for 60 seconds
  my $slotid = shift;
  $slot[$slotid]->{node}->{hold_until} = 60 + scalar time;
  $slot[$slotid]->{node}->{hold_count}++;
  Log (undef, "backing off node " . $slot[$slotid]->{node}->{name} . " for 60 seconds");
}

sub must_lock_now
{
  my ($lockfile, $error_message) = @_;
  open L, ">", $lockfile or croak("$lockfile: $!");
  if (!flock L, LOCK_EX|LOCK_NB) {
    croak("Can't lock $lockfile: $error_message\n");
  }
}

sub find_docker_image {
  # Given a Keep locator, check to see if it contains a Docker image.
  # If so, return its stream name and Docker hash.
  # If not, return undef for both values.
  my $locator = shift;
  my ($streamname, $filename);
  if (my $image = $arv->{collections}->{get}->execute(uuid => $locator)) {
    foreach my $line (split(/\n/, $image->{manifest_text})) {
      my @tokens = split(/\s+/, $line);
      next if (!@tokens);
      $streamname = shift(@tokens);
      foreach my $filedata (grep(/^\d+:\d+:/, @tokens)) {
        if (defined($filename)) {
          return (undef, undef);  # More than one file in the Collection.
        } else {
          $filename = (split(/:/, $filedata, 3))[2];
        }
      }
    }
  }
  if (defined($filename) and ($filename =~ /^([0-9A-Fa-f]{64})\.tar$/)) {
    return ($streamname, $1);
  } else {
    return (undef, undef);
  }
}

sub put_retry_count {
  # Calculate a --retries argument for arv-put that will have it try
  # approximately as long as this Job has been running.
  my $stoptime = shift || time;
  my $starttime = $jobstep[0]->{starttime};
  my $timediff = defined($starttime) ? ($stoptime - $starttime) : 1;
  my $retries = 0;
  while ($timediff >= 2) {
    $retries++;
    $timediff /= 2;
  }
  return ($retries > 3) ? $retries : 3;
}

sub exit_status_s {
  # Given a $?, return a human-readable exit code string like "0" or
  # "1" or "0 with signal 1" or "1 with signal 11".
  my $exitcode = shift;
  my $s = $exitcode >> 8;
  if ($exitcode & 0x7f) {
    $s .= " with signal " . ($exitcode & 0x7f);
  }
  if ($exitcode & 0x80) {
    $s .= " with core dump";
  }
  return $s;
}

__DATA__
#!/usr/bin/perl

# checkout-and-build

use Fcntl ':flock';
use File::Path qw( make_path );

my $destdir = $ENV{"CRUNCH_SRC"};
my $commit = $ENV{"CRUNCH_SRC_COMMIT"};
my $repo = $ENV{"CRUNCH_SRC_URL"};
my $task_work = $ENV{"TASK_WORK"};

for my $dir ($destdir, $task_work) {
    if ($dir) {
        make_path $dir;
        -e $dir or die "Failed to create temporary directory ($dir): $!";
    }
}

open L, ">", "$destdir.lock" or die "$destdir.lock: $!";
flock L, LOCK_EX;
if (readlink ("$destdir.commit") eq $commit && -d $destdir) {
    if (@ARGV) {
        exec(@ARGV);
        die "Cannot exec `@ARGV`: $!";
    } else {
        exit 0;
    }
}

unlink "$destdir.commit";
open STDOUT, ">", "$destdir.log";
open STDERR, ">&STDOUT";

mkdir $destdir;
my @git_archive_data = <DATA>;
if (@git_archive_data) {
  open TARX, "|-", "tar", "-C", $destdir, "-xf", "-";
  print TARX @git_archive_data;
  if(!close(TARX)) {
    die "'tar -C $destdir -xf -' exited $?: $!";
  }
}

my $pwd;
chomp ($pwd = `pwd`);
my $install_dir = $ENV{"CRUNCH_INSTALL"} || "$pwd/opt";
mkdir $install_dir;

for my $src_path ("$destdir/arvados/sdk/python") {
  if (-d $src_path) {
    shell_or_die ("virtualenv", $install_dir);
    shell_or_die ("cd $src_path && ./build.sh && $install_dir/bin/python setup.py install");
  }
}

if (-e "$destdir/crunch_scripts/install") {
    shell_or_die ("$destdir/crunch_scripts/install", $install_dir);
} elsif (!-e "./install.sh" && -e "./tests/autotests.sh") {
    # Old version
    shell_or_die ("./tests/autotests.sh", $install_dir);
} elsif (-e "./install.sh") {
    shell_or_die ("./install.sh", $install_dir);
}

if ($commit) {
    unlink "$destdir.commit.new";
    symlink ($commit, "$destdir.commit.new") or die "$destdir.commit.new: $!";
    rename ("$destdir.commit.new", "$destdir.commit") or die "$destdir.commit: $!";
}

close L;

if (@ARGV) {
    exec(@ARGV);
    die "Cannot exec `@ARGV`: $!";
} else {
    exit 0;
}

sub shell_or_die
{
  if ($ENV{"DEBUG"}) {
    print STDERR "@_\n";
  }
  system (@_) == 0
      or die "@_ failed: $! exit 0x".sprintf("%x",$?);
}

__DATA__