R SDK for Arvados

Examples of usage:

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#Initialize API:

arv <- Arvados$new("insert_token", "insert_host_name")

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#Get collection:

arv$getCollection("uuid")

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#List collections:

collectionList <- arv$listCollections(list("uuid", "=" "aaaaa-bbbbb-ccccccccccccccc"), limit = 10, offset = 2)

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#Delete collection:

deletedCollection <- arv$deleteCollection("uuid")

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#Update collection:

updatedCollection <- arv$updateCollection("uuid", list(collection = list(name = "new_name", description = "new_desciption")))

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#Create collection:

updatedCollection <- arv$createCollection("uuid", list(collection = list(name = "new_name", description = "new_desciption")))

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#Collection manipulation:

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#Create collection object:

arv <- Arvados$new("insert_token", "insert_host_name")
collection <- Collection$new(arv, "uuid")

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#Print content of the collection

collection$printFileContent()

#of if you just want a list of relative paths:

collection$printFileContent(pretty = FALSE)

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#This will return ArvadosFile or Subcollection from internal tree-like structure.

arvadosFile <- collection$get("location/to/my/file.cpp")

#or

arvadosSubcollection <- collection.get("location/to/my/directory/")

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#Read whole file or just a portion of it.

arvadosFile$read(offset = 1024, length = 512)

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