source("fakes/FakeRESTService.R") context("Collection") test_that(paste("constructor creates file tree from text content", "retreived form REST service"), { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") root <- collection$get("") expect_that(fakeREST$getCollectionContentCallCount, equals(1)) expect_that(root$getName(), equals("")) }) test_that(paste("add raises exception if passed argumet is not", "ArvadosFile or Subcollection"), { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") newNumber <- 10 expect_that(collection$add(newNumber), throws_error(paste("Expected AravodsFile or Subcollection", "object, got (numeric)."), fixed = TRUE)) }) test_that("add raises exception if relative path is not valid", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") newPen <- ArvadosFile$new("pen") expect_that(collection$add(newPen, "objects"), throws_error("Subcollection objects doesn't exist.", fixed = TRUE)) }) test_that(paste("add adds ArvadosFile or Subcollection", "to local tree structure and remote REST service"), { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") newDog <- ArvadosFile$new("dog") collection$add(newDog, "animal") dog <- collection$get("animal/dog") dogExistsInCollection <- !is.null(dog) && dog$getName() == "dog" expect_that(dogExistsInCollection, is_true()) expect_that(fakeREST$createCallCount, equals(1)) }) test_that("create raises exception if passed argumet is not character vector", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") expect_that(collection$create(10), throws_error("Expected character vector, got (numeric).", fixed = TRUE)) }) test_that("create raises exception if relative path is not valid", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") newPen <- ArvadosFile$new("pen") expect_that(collection$create(newPen, "objects"), throws_error("Subcollection objects doesn't exist.", fixed = TRUE)) }) test_that(paste("create adds files specified by fileNames", "to local tree structure and remote REST service"), { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") files <- c("dog", "cat") collection$create(files, "animal") dog <- collection$get("animal/dog") cat <- collection$get("animal/cat") dogExistsInCollection <- !is.null(dog) && dog$getName() == "dog" catExistsInCollection <- !is.null(cat) && cat$getName() == "cat" expect_that(dogExistsInCollection, is_true()) expect_that(catExistsInCollection, is_true()) expect_that(fakeREST$createCallCount, equals(2)) }) test_that("remove raises exception if passed argumet is not character vector", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") expect_that(collection$remove(10), throws_error("Expected character vector, got (numeric).", fixed = TRUE)) }) test_that(paste("remove removes files specified by paths", "from local tree structure and from remote REST service"), { collectionContent <- c("animal", "animal/fish", "animal/dog", "animal/cat", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") collection$remove(c("animal/dog", "animal/cat")) dog <- collection$get("animal/dog") cat <- collection$get("animal/dog") dogExistsInCollection <- !is.null(dog) && dog$getName() == "dog" catExistsInCollection <- !is.null(cat) && cat$getName() == "cat" expect_that(dogExistsInCollection, is_false()) expect_that(catExistsInCollection, is_false()) expect_that(fakeREST$deleteCallCount, equals(2)) }) test_that(paste("move moves content to a new location inside file tree", "and on REST service"), { collectionContent <- c("animal", "animal/dog", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") collection$move("animal/dog", "dog") dogIsNullOnOldLocation <- is.null(collection$get("animal/dog")) dogExistsOnNewLocation <- !is.null(collection$get("dog")) expect_that(dogIsNullOnOldLocation, is_true()) expect_that(dogExistsOnNewLocation, is_true()) expect_that(fakeREST$moveCallCount, equals(1)) }) test_that("move raises exception if new location is not valid", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") expect_that(collection$move("fish", "object"), throws_error("Element you want to move doesn't exist in the collection.", fixed = TRUE)) }) test_that("getFileListing returns sorted collection content received from REST service", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") contentMatchExpected <- all(collection$getFileListing() == c("animal", "animal/fish", "ball")) expect_that(contentMatchExpected, is_true()) #2 calls because Collection$new calls getFileListing once expect_that(fakeREST$getCollectionContentCallCount, equals(2)) }) test_that("get returns arvados file or subcollection from internal tree structure", { collectionContent <- c("animal", "animal/fish", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") fish <- collection$get("animal/fish") fishIsNotNull <- !is.null(fish) expect_that(fishIsNotNull, is_true()) expect_that(fish$getName(), equals("fish")) })