# Copyright (C) The Arvados Authors. All rights reserved. # # SPDX-License-Identifier: Apache-2.0 import functools import json import logging import mock import os import StringIO import unittest import arvados import arvados_cwl from .mock_discovery import get_rootDesc class TestMakeOutput(unittest.TestCase): def setUp(self): self.api = mock.MagicMock() self.api._rootDesc = get_rootDesc() @mock.patch("arvados.collection.Collection") @mock.patch("arvados.collection.CollectionReader") def test_make_output_collection(self, reader, col): keep_client = mock.MagicMock() runner = arvados_cwl.ArvCwlRunner(self.api, keep_client=keep_client) runner.project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' final = mock.MagicMock() col.return_value = final readermock = mock.MagicMock() reader.return_value = readermock final_uuid = final.manifest_locator() num_retries = runner.num_retries cwlout = StringIO.StringIO() openmock = mock.MagicMock() final.open.return_value = openmock openmock.__enter__.return_value = cwlout _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "tag0,tag1,tag2", { "foo": { "class": "File", "location": "keep:99999999999999999999999999999991+99/foo.txt", "size": 3, "basename": "foo.txt" }, "bar": { "class": "File", "location": "keep:99999999999999999999999999999992+99/bar.txt", "basename": "baz.txt", "size": 4 } }) final.copy.assert_has_calls([mock.call('bar.txt', 'baz.txt', overwrite=False, source_collection=readermock)]) final.copy.assert_has_calls([mock.call('foo.txt', 'foo.txt', overwrite=False, source_collection=readermock)]) final.save_new.assert_has_calls([mock.call(ensure_unique_name=True, name='Test output', owner_uuid='zzzzz-j7d0g-zzzzzzzzzzzzzzz', storage_classes=['foo'])]) self.assertEqual("""{ "bar": { "basename": "baz.txt", "class": "File", "location": "baz.txt", "size": 4 }, "foo": { "basename": "foo.txt", "class": "File", "location": "foo.txt", "size": 3 } }""", cwlout.getvalue()) self.assertIs(final, runner.final_output_collection) self.assertIs(final_uuid, runner.final_output_collection.manifest_locator()) self.api.links().create.assert_has_calls([mock.call(body={"head_uuid": final_uuid, "link_class": "tag", "name": "tag0"}), mock.call().execute(num_retries=num_retries)]) self.api.links().create.assert_has_calls([mock.call(body={"head_uuid": final_uuid, "link_class": "tag", "name": "tag1"}), mock.call().execute(num_retries=num_retries)]) self.api.links().create.assert_has_calls([mock.call(body={"head_uuid": final_uuid, "link_class": "tag", "name": "tag2"}), mock.call().execute(num_retries=num_retries)])