cwlVersion: v1.0 $graph: - class: CommandLineTool requirements: - class: DockerRequirement dockerPull: debian:8 inputs: - id: '#submit_tool.cwl/x' type: File default: class: File location: keep:99999999999999999999999999999991+99/blub.txt inputBinding: position: 1 outputs: [] baseCommand: cat id: '#submit_tool.cwl' - class: Workflow inputs: - id: '#main/x' type: File default: {class: File, location: 'keep:99999999999999999999999999999992+99/blorp.txt', basename: blorp.txt} - id: '#main/y' type: Directory default: {class: Directory, location: 'keep:99999999999999999999999999999998+99', basename: 99999999999999999999999999999998+99} - id: '#main/z' type: Directory default: {class: Directory, basename: anonymous, listing: [{basename: renamed.txt, class: File, location: 'keep:99999999999999999999999999999998+99/file1.txt'}]} outputs: [] steps: - id: '#main/step1' in: - {id: '#main/step1/x', source: '#main/x'} out: [] run: '#submit_tool.cwl' id: '#main'