source("fakes/FakeRESTService.R") context("Subcollection") test_that("getRelativePath returns path relative to the tree root", { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") animal$add(fish) expect_that(animal$getRelativePath(), equals("animal")) expect_that(fish$getRelativePath(), equals("animal/fish")) }) test_that(paste("getFileListing by default returns sorted path of all files", "relative to the current subcollection"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") shark <- ArvadosFile$new("shark") blueFish <- ArvadosFile$new("blueFish") animal$add(fish) fish$add(shark) fish$add(blueFish) result <- animal$getFileListing() #expect sorted array expectedResult <- c("animal/fish/blueFish", "animal/fish/shark") resultsMatch <- length(expectedResult) == length(result) && all(expectedResult == result) expect_that(resultsMatch, is_true()) }) test_that(paste("getFileListing returns sorted names of all direct children", "if fullPath is set to FALSE"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") shark <- ArvadosFile$new("shark") dog <- ArvadosFile$new("dog") animal$add(fish) animal$add(dog) fish$add(shark) result <- animal$getFileListing(fullPath = FALSE) expectedResult <- c("dog", "fish") resultsMatch <- length(expectedResult) == length(result) && all(expectedResult == result) expect_that(resultsMatch, is_true()) }) test_that("add adds content to inside collection tree", { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") dog <- ArvadosFile$new("dog") animal$add(fish) animal$add(dog) animalContainsFish <- animal$get("fish")$getName() == fish$getName() animalContainsDog <- animal$get("dog")$getName() == dog$getName() expect_that(animalContainsFish, is_true()) expect_that(animalContainsDog, is_true()) }) test_that("add raises exception if content name is empty string", { animal <- Subcollection$new("animal") rootFolder <- Subcollection$new("") expect_that(animal$add(rootFolder), throws_error("Content has invalid name.", fixed = TRUE)) }) test_that(paste("add raises exception if ArvadosFile/Subcollection", "with same name already exists in the subcollection"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") secondFish <- Subcollection$new("fish") thirdFish <- ArvadosFile$new("fish") animal$add(fish) expect_that(animal$add(secondFish), throws_error(paste("Subcollection already contains ArvadosFile or", "Subcollection with same name."), fixed = TRUE)) expect_that(animal$add(thirdFish), throws_error(paste("Subcollection already contains ArvadosFile or", "Subcollection with same name."), fixed = TRUE)) }) test_that(paste("add raises exception if passed argument is", "not ArvadosFile or Subcollection"), { animal <- Subcollection$new("animal") number <- 10 expect_that(animal$add(number), throws_error(paste("Expected AravodsFile or Subcollection object,", "got (numeric)."), fixed = TRUE)) }) test_that(paste("add post content to a REST service", "if subcollection belongs to a collection"), { collectionContent <- c("animal", "animal/fish") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") animal <- collection$get("animal") dog <- ArvadosFile$new("dog") animal$add(dog) expect_that(fakeREST$createCallCount, equals(1)) }) test_that("remove removes content from subcollection", { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") animal$add(fish) animal$remove("fish") returnValueAfterRemovalIsNull <- is.null(animal$get("fish")) expect_that(returnValueAfterRemovalIsNull, is_true()) }) test_that(paste("remove raises exception", "if content to remove doesn't exist in the subcollection"), { animal <- Subcollection$new("animal") expect_that(animal$remove("fish"), throws_error(paste("Subcollection doesn't contains ArvadosFile", "or Subcollection with specified name."))) }) test_that("remove raises exception if passed argument is not character vector", { animal <- Subcollection$new("animal") number <- 10 expect_that(animal$remove(number), throws_error(paste("Expected character,", "got (numeric)."), fixed = TRUE)) }) test_that(paste("remove removes content from REST service", "if subcollection belongs to a collection"), { collectionContent <- c("animal", "animal/fish", "animal/dog") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") animal <- collection$get("animal") animal$remove("fish") expect_that(fakeREST$deleteCallCount, equals(1)) }) test_that(paste("get returns ArvadosFile or Subcollection", "if file or folder with given name exists"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") dog <- ArvadosFile$new("dog") animal$add(fish) animal$add(dog) returnedFish <- animal$get("fish") returnedDog <- animal$get("dog") returnedFishIsSubcollection <- "Subcollection" %in% class(returnedFish) returnedDogIsArvadosFile <- "ArvadosFile" %in% class(returnedDog) expect_that(returnedFishIsSubcollection, is_true()) expect_that(returnedFish$getName(), equals("fish")) expect_that(returnedDogIsArvadosFile, is_true()) expect_that(returnedDog$getName(), equals("dog")) }) test_that(paste("get returns NULL if file or folder", "with given name doesn't exists"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") animal$add(fish) returnedDogIsNull <- is.null(animal$get("dog")) expect_that(returnedDogIsNull, is_true()) }) test_that("getFirst returns first child in the subcollection", { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") animal$add(fish) expect_that(animal$getFirst()$getName(), equals("fish")) }) test_that("getFirst returns NULL if subcollection contains no children", { animal <- Subcollection$new("animal") returnedElementIsNull <- is.null(animal$getFirst()) expect_that(returnedElementIsNull, is_true()) }) test_that(paste("setCollection by default sets collection", "filed of subcollection and all its children"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") animal$add(fish) animal$setCollection("myCollection") expect_that(animal$getCollection(), equals("myCollection")) expect_that(fish$getCollection(), equals("myCollection")) }) test_that(paste("setCollection sets collection filed of subcollection only", "if parameter setRecursively is set to FALSE"), { animal <- Subcollection$new("animal") fish <- Subcollection$new("fish") animal$add(fish) animal$setCollection("myCollection", setRecursively = FALSE) fishCollectionIsNull <- is.null(fish$getCollection()) expect_that(animal$getCollection(), equals("myCollection")) expect_that(fishCollectionIsNull, is_true()) }) test_that(paste("move raises exception if subcollection", "doesn't belong to any collection"), { animal <- Subcollection$new("animal") expect_that(animal$move("new/location"), throws_error("Subcollection doesn't belong to any collection")) }) test_that("move raises exception if new location contains content with the same name", { collectionContent <- c("animal", "animal/fish", "animal/dog", "animal/fish/shark", "fish") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") fish <- collection$get("animal/fish") expect_that(fish$move("fish"), throws_error("Destination already contains content with same name.")) }) test_that(paste("move raises exception if newLocationInCollection", "parameter is invalid"), { collectionContent <- c("animal", "animal/fish", "animal/dog", "animal/fish/shark", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") fish <- collection$get("animal/fish") expect_that(fish$move("objects/dog"), throws_error("Unable to get destination subcollection")) }) test_that("move moves subcollection inside collection tree", { collectionContent <- c("animal", "animal/fish", "animal/dog", "animal/fish/shark", "ball") fakeREST <- FakeRESTService$new(collectionContent) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") fish <- collection$get("animal/fish") fish$move("fish") fishIsNullOnOldLocation <- is.null(collection$get("animal/fish")) fishExistsOnNewLocation <- !is.null(collection$get("fish")) expect_that(fishIsNullOnOldLocation, is_true()) expect_that(fishExistsOnNewLocation, is_true()) }) test_that(paste("getSizeInBytes returns zero if subcollection", "is not part of a collection"), { animal <- Subcollection$new("animal") expect_that(animal$getSizeInBytes(), equals(0)) }) test_that(paste("getSizeInBytes delegates size calculation", "to REST service class"), { collectionContent <- c("animal", "animal/fish") returnSize <- 100 fakeREST <- FakeRESTService$new(collectionContent, returnSize) api <- Arvados$new("myToken", "myHostName") api$setRESTService(fakeREST) collection <- Collection$new(api, "myUUID") animal <- collection$get("animal") resourceSize <- animal$getSizeInBytes() expect_that(resourceSize, equals(100)) })