# baseurl is the location of the generated site from the browser's
# perspective (e.g., http://doc.arvados.org or
# file:///tmp/arvados/doc/.site). To make docs show up inside
# workbench, use /doc here and add a symlink at
# apps/workbench/public/doc pointing to ../../../doc/.site
# You can also set these on the command line:
# $ rake generate baseurl=/example arvados_api_host=example.com

baseurl:
arvados_api_host: localhost
arvados_workbench_host: localhost

exclude: ["Rakefile", "tmp", "vendor"]

navbar:
  userguide:
    - Getting Started:
      - user/index.html.textile.liquid
      - user/getting_started/community.html.textile.liquid
    - Run a pipeline using Workbench:
      - user/getting_started/workbench.html.textile.liquid
      - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
    - Access an Arvados virtual machine:
      - user/getting_started/ssh-access-unix.html.textile.liquid
      - user/getting_started/ssh-access-windows.html.textile.liquid
      - user/getting_started/check-environment.html.textile.liquid
      - user/reference/api-tokens.html.textile.liquid
    - Working with data sets:
      - user/tutorials/tutorial-keep.html.textile.liquid
      - user/tutorials/tutorial-keep-get.html.textile.liquid
      - user/tutorials/tutorial-keep-mount.html.textile.liquid
      - user/topics/keep.html.textile.liquid
    - Run a pipeline on the command line:
      - user/topics/running-pipeline-command-line.html.textile.liquid
      - user/reference/sdk-cli.html.textile.liquid
    - Develop a new pipeline:
      - user/tutorials/intro-crunch.html.textile.liquid
      - user/tutorials/running-external-program.html.textile.liquid
      - user/tutorials/tutorial-firstscript.html.textile.liquid
      - user/tutorials/tutorial-submit-job.html.textile.liquid
      - user/topics/tutorial-parallel.html.textile.liquid
      - user/topics/arv-docker.html.textile.liquid
    - Reference:
      - user/topics/run-command.html.textile.liquid
      - api/schema/PipelineTemplate.html.textile.liquid
      - api/schema/Job.html.textile.liquid
      - user/examples/crunch-examples.html.textile.liquid
    - Query the metadata database:
      - user/topics/tutorial-trait-search.html.textile.liquid
    - Arvados License:
      - user/copying/copying.html.textile.liquid
      - user/copying/agpl-3.0.html
      - user/copying/LICENSE-2.0.html
      - user/copying/by-sa-3.0.html
  sdk:
    - Overview:
      - sdk/index.html.textile.liquid
    - Python:
      - sdk/python/sdk-python.html.textile.liquid
      - sdk/python/python.html.textile.liquid
      - sdk/python/crunch-utility-libraries.html.textile.liquid
    - Perl:
      - sdk/perl/index.html.textile.liquid
    - Ruby:
      - sdk/ruby/index.html.textile.liquid
    - Java:
      - sdk/java/index.html.textile.liquid
    - Go:
      - sdk/go/index.html.textile.liquid
    - CLI:
      - sdk/cli/index.html.textile.liquid
  api:
    - Concepts:
      - api/index.html.textile.liquid
      - api/authentication.html.textile.liquid
      - api/methods.html.textile.liquid
      - api/resources.html.textile.liquid
      - api/crunch-scripts.html.textile.liquid
      - api/permission-model.html.textile.liquid
    - API Methods:
      - api/methods/api_client_authorizations.html.textile.liquid
      - api/methods/api_clients.html.textile.liquid
      - api/methods/authorized_keys.html.textile.liquid
      - api/methods/collections.html.textile.liquid
      - api/methods/groups.html.textile.liquid
      - api/methods/humans.html.textile.liquid
      - api/methods/jobs.html.textile.liquid
      - api/methods/job_tasks.html.textile.liquid
      - api/methods/keep_disks.html.textile.liquid
      - api/methods/keep_services.html.textile.liquid
      - api/methods/links.html.textile.liquid
      - api/methods/logs.html.textile.liquid
      - api/methods/nodes.html.textile.liquid
      - api/methods/pipeline_instances.html.textile.liquid
      - api/methods/pipeline_templates.html.textile.liquid
      - api/methods/repositories.html.textile.liquid
      - api/methods/specimens.html.textile.liquid
      - api/methods/traits.html.textile.liquid
      - api/methods/users.html.textile.liquid
      - api/methods/virtual_machines.html.textile.liquid
    - Schema:
      - api/schema/ApiClientAuthorization.html.textile.liquid
      - api/schema/ApiClient.html.textile.liquid
      - api/schema/AuthorizedKey.html.textile.liquid
      - api/schema/Collection.html.textile.liquid
      - api/schema/Group.html.textile.liquid
      - api/schema/Human.html.textile.liquid
      - api/schema/Job.html.textile.liquid
      - api/schema/JobTask.html.textile.liquid
      - api/schema/KeepDisk.html.textile.liquid
      - api/schema/KeepService.html.textile.liquid
      - api/schema/Link.html.textile.liquid
      - api/schema/Log.html.textile.liquid
      - api/schema/Node.html.textile.liquid
      - api/schema/PipelineInstance.html.textile.liquid
      - api/schema/PipelineTemplate.html.textile.liquid
      - api/schema/Repository.html.textile.liquid
      - api/schema/Specimen.html.textile.liquid
      - api/schema/Trait.html.textile.liquid
      - api/schema/User.html.textile.liquid
      - api/schema/VirtualMachine.html.textile.liquid
  admin:
    - Admin:
      - admin/index.html.md.liquid
      - admin/cheat_sheet.html.textile.liquid
  installguide:
    - Overview:
      - install/index.html.textile.liquid
    - Docker:
      - install/install-docker.html.textile.liquid
    - Manual installation:
      - install/install-keep.html.textile.liquid
      - install/install-sso.html.textile.liquid
      - install/install-api-server.html.textile.liquid
      - install/install-workbench-app.html.textile.liquid
      - install/create-standard-objects.html.textile.liquid
      - install/install-crunch-dispatch.html.textile.liquid