import unittest import mock import arvados_cwl import sys import arvados import arvados.keep import arvados.collection import hashlib class TestSubmit(unittest.TestCase): @mock.patch("arvados.commands.keepdocker.list_images_in_arv") @mock.patch("arvados.collection.KeepClient") @mock.patch("arvados.events.subscribe") def test_submit(self, events, keep, keepdocker): api = mock.MagicMock() def putstub(p, **kwargs): return "%s+%i" % (hashlib.md5(p).hexdigest(), len(p)) keep().put.side_effect = putstub keepdocker.return_value = True api.users().current().execute.return_value = {"uuid": "zzzzz-tpzed-zzzzzzzzzzzzzzz"} api.collections().list().execute.return_value = {"items": []} api.collections().create().execute.side_effect = ({"uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz1", "portable_data_hash": "99999999999999999999999999999991+99"}, {"uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz2", "portable_data_hash": "99999999999999999999999999999992+99"}) api.jobs().create().execute.return_value = {"uuid": "zzzzz-8i9sb-zzzzzzzzzzzzzzz", "state": "Queued"} arvados_cwl.main(["--debug", "--submit", "--no-wait", "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], sys.stdout, sys.stderr, api_client=api) api.collections().create.assert_has_calls([ mock.call(), mock.call(body={'manifest_text': './tool 84ec4df683711de31b782505389a8843+429 0:16:blub.txt 16:413:submit_tool.cwl\n./wf 81d977a245a41b8e79859fbe00623fd0+344 0:344:submit_wf.cwl\n', 'owner_uuid': 'zzzzz-tpzed-zzzzzzzzzzzzzzz', 'name': 'submit_wf.cwl' }, ensure_unique_name=True), mock.call().execute(), mock.call(body={'manifest_text': '. 979af1245a12a1fed634d4222473bfdc+16 0:16:blorp.txt\n', 'owner_uuid': 'zzzzz-tpzed-zzzzzzzzzzzzzzz', 'name': '#' }, ensure_unique_name=True), mock.call().execute()]) api.jobs().create.assert_called_with( body={ 'runtime_constraints': { 'docker_image': 'arvados/jobs' }, 'script_parameters': { 'x': { 'path': '99999999999999999999999999999992+99/blorp.txt', 'class': 'File' }, 'cwl:tool': '99999999999999999999999999999991+99/wf/submit_wf.cwl' }, 'repository': 'arvados', 'script_version': 'master', 'script': 'cwl-runner' }, find_or_create=True)