% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/Arvados.R
\name{Arvados}
\alias{Arvados}
\title{Arvados}
\description{
Arvados class gives users ability to access Arvados REST API.
}
\section{Usage}{

\preformatted{arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)}
}

\section{Arguments}{

\describe{
	\item{authToken}{Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.}
	\item{hostName}{Host name. If not specified ARVADOS_API_HOST environment variable will be used.}
	\item{numRetries}{Number which specifies how many times to retry failed service requests.}
}
}

\section{Methods}{

\describe{
	\item{}{\code{\link{api_client_authorizations.create}}}
	\item{}{\code{\link{api_client_authorizations.create_system_auth}}}
	\item{}{\code{\link{api_client_authorizations.current}}}
	\item{}{\code{\link{api_client_authorizations.delete}}}
	\item{}{\code{\link{api_client_authorizations.get}}}
	\item{}{\code{\link{api_client_authorizations.list}}}
	\item{}{\code{\link{api_client_authorizations.update}}}
	\item{}{\code{\link{api_clients.create}}}
	\item{}{\code{\link{api_clients.delete}}}
	\item{}{\code{\link{api_clients.get}}}
	\item{}{\code{\link{api_clients.list}}}
	\item{}{\code{\link{api_clients.update}}}
	\item{}{\code{\link{authorized_keys.create}}}
	\item{}{\code{\link{authorized_keys.delete}}}
	\item{}{\code{\link{authorized_keys.get}}}
	\item{}{\code{\link{authorized_keys.list}}}
	\item{}{\code{\link{authorized_keys.update}}}
	\item{}{\code{\link{collections.create}}}
	\item{}{\code{\link{collections.delete}}}
	\item{}{\code{\link{collections.get}}}
	\item{}{\code{\link{collections.list}}}
	\item{}{\code{\link{collections.provenance}}}
	\item{}{\code{\link{collections.trash}}}
	\item{}{\code{\link{collections.untrash}}}
	\item{}{\code{\link{collections.update}}}
	\item{}{\code{\link{collections.used_by}}}
	\item{}{\code{\link{container_requests.create}}}
	\item{}{\code{\link{container_requests.delete}}}
	\item{}{\code{\link{container_requests.get}}}
	\item{}{\code{\link{container_requests.list}}}
	\item{}{\code{\link{container_requests.update}}}
	\item{}{\code{\link{containers.auth}}}
	\item{}{\code{\link{containers.create}}}
	\item{}{\code{\link{containers.current}}}
	\item{}{\code{\link{containers.delete}}}
	\item{}{\code{\link{containers.get}}}
	\item{}{\code{\link{containers.list}}}
	\item{}{\code{\link{containers.lock}}}
	\item{}{\code{\link{containers.secret_mounts}}}
	\item{}{\code{\link{containers.unlock}}}
	\item{}{\code{\link{containers.update}}}
	\item{}{\code{\link{groups.contents}}}
	\item{}{\code{\link{groups.create}}}
	\item{}{\code{\link{groups.delete}}}
	\item{}{\code{\link{groups.get}}}
	\item{}{\code{\link{groups.list}}}
	\item{}{\code{\link{groups.trash}}}
	\item{}{\code{\link{groups.untrash}}}
	\item{}{\code{\link{groups.update}}}
	\item{}{\code{\link{humans.create}}}
	\item{}{\code{\link{humans.delete}}}
	\item{}{\code{\link{humans.get}}}
	\item{}{\code{\link{humans.list}}}
	\item{}{\code{\link{humans.update}}}
	\item{}{\code{\link{jobs.cancel}}}
	\item{}{\code{\link{jobs.create}}}
	\item{}{\code{\link{jobs.delete}}}
	\item{}{\code{\link{jobs.get}}}
	\item{}{\code{\link{jobs.list}}}
	\item{}{\code{\link{jobs.lock}}}
	\item{}{\code{\link{jobs.queue}}}
	\item{}{\code{\link{jobs.queue_size}}}
	\item{}{\code{\link{jobs.update}}}
	\item{}{\code{\link{job_tasks.create}}}
	\item{}{\code{\link{job_tasks.delete}}}
	\item{}{\code{\link{job_tasks.get}}}
	\item{}{\code{\link{job_tasks.list}}}
	\item{}{\code{\link{job_tasks.update}}}
	\item{}{\code{\link{keep_disks.create}}}
	\item{}{\code{\link{keep_disks.delete}}}
	\item{}{\code{\link{keep_disks.get}}}
	\item{}{\code{\link{keep_disks.list}}}
	\item{}{\code{\link{keep_disks.ping}}}
	\item{}{\code{\link{keep_disks.update}}}
	\item{}{\code{\link{keep_services.accessible}}}
	\item{}{\code{\link{keep_services.create}}}
	\item{}{\code{\link{keep_services.delete}}}
	\item{}{\code{\link{keep_services.get}}}
	\item{}{\code{\link{keep_services.list}}}
	\item{}{\code{\link{keep_services.update}}}
	\item{}{\code{\link{links.create}}}
	\item{}{\code{\link{links.delete}}}
	\item{}{\code{\link{links.get}}}
	\item{}{\code{\link{links.get_permissions}}}
	\item{}{\code{\link{links.list}}}
	\item{}{\code{\link{links.update}}}
	\item{}{\code{\link{logs.create}}}
	\item{}{\code{\link{logs.delete}}}
	\item{}{\code{\link{logs.get}}}
	\item{}{\code{\link{logs.list}}}
	\item{}{\code{\link{logs.update}}}
	\item{}{\code{\link{nodes.create}}}
	\item{}{\code{\link{nodes.delete}}}
	\item{}{\code{\link{nodes.get}}}
	\item{}{\code{\link{nodes.list}}}
	\item{}{\code{\link{nodes.ping}}}
	\item{}{\code{\link{nodes.update}}}
	\item{}{\code{\link{pipeline_instances.cancel}}}
	\item{}{\code{\link{pipeline_instances.create}}}
	\item{}{\code{\link{pipeline_instances.delete}}}
	\item{}{\code{\link{pipeline_instances.get}}}
	\item{}{\code{\link{pipeline_instances.list}}}
	\item{}{\code{\link{pipeline_instances.update}}}
	\item{}{\code{\link{pipeline_templates.create}}}
	\item{}{\code{\link{pipeline_templates.delete}}}
	\item{}{\code{\link{pipeline_templates.get}}}
	\item{}{\code{\link{pipeline_templates.list}}}
	\item{}{\code{\link{pipeline_templates.update}}}
	\item{}{\code{\link{projects.create}}}
	\item{}{\code{\link{projects.delete}}}
	\item{}{\code{\link{projects.get}}}
	\item{}{\code{\link{projects.list}}}
	\item{}{\code{\link{projects.update}}}
	\item{}{\code{\link{repositories.create}}}
	\item{}{\code{\link{repositories.delete}}}
	\item{}{\code{\link{repositories.get}}}
	\item{}{\code{\link{repositories.get_all_permissions}}}
	\item{}{\code{\link{repositories.list}}}
	\item{}{\code{\link{repositories.update}}}
	\item{}{\code{\link{specimens.create}}}
	\item{}{\code{\link{specimens.delete}}}
	\item{}{\code{\link{specimens.get}}}
	\item{}{\code{\link{specimens.list}}}
	\item{}{\code{\link{specimens.update}}}
	\item{}{\code{\link{traits.create}}}
	\item{}{\code{\link{traits.delete}}}
	\item{}{\code{\link{traits.get}}}
	\item{}{\code{\link{traits.list}}}
	\item{}{\code{\link{traits.update}}}
	\item{}{\code{\link{user_agreements.create}}}
	\item{}{\code{\link{user_agreements.delete}}}
	\item{}{\code{\link{user_agreements.get}}}
	\item{}{\code{\link{user_agreements.list}}}
	\item{}{\code{\link{user_agreements.new}}}
	\item{}{\code{\link{user_agreements.sign}}}
	\item{}{\code{\link{user_agreements.signatures}}}
	\item{}{\code{\link{user_agreements.update}}}
	\item{}{\code{\link{users.activate}}}
	\item{}{\code{\link{users.create}}}
	\item{}{\code{\link{users.current}}}
	\item{}{\code{\link{users.delete}}}
	\item{}{\code{\link{users.get}}}
	\item{}{\code{\link{users.list}}}
	\item{}{\code{\link{users.merge}}}
	\item{}{\code{\link{users.setup}}}
	\item{}{\code{\link{users.system}}}
	\item{}{\code{\link{users.unsetup}}}
	\item{}{\code{\link{users.update}}}
	\item{}{\code{\link{virtual_machines.create}}}
	\item{}{\code{\link{virtual_machines.delete}}}
	\item{}{\code{\link{virtual_machines.get}}}
	\item{}{\code{\link{virtual_machines.get_all_logins}}}
	\item{}{\code{\link{virtual_machines.list}}}
	\item{}{\code{\link{virtual_machines.logins}}}
	\item{}{\code{\link{virtual_machines.update}}}
	\item{}{\code{\link{workflows.create}}}
	\item{}{\code{\link{workflows.delete}}}
	\item{}{\code{\link{workflows.get}}}
	\item{}{\code{\link{workflows.list}}}
	\item{}{\code{\link{workflows.update}}}
}
}

\examples{
\dontrun{
arv <- Arvados$new("your Arvados token", "example.arvadosapi.com")

collection <- arv$collections.get("uuid")

collectionList <- arv$collections.list(list(list("name", "like", "Test\%")))
collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test\%")))

deletedCollection <- arv$collections.delete("uuid")

updatedCollection <- arv$collections.update(list(name = "New name", description = "New description"),
                                            "uuid")

createdCollection <- arv$collections.create(list(name = "Example",
                                                 description = "This is a test collection"))
}
}