1 // Copyright (C) The Arvados Authors. All rights reserved.
3 // SPDX-License-Identifier: AGPL-3.0
5 import { ContainerState } from "models/container";
7 describe("Process tests", function () {
12 // Only set up common users once. These aren't set up as aliases because
13 // aliases are cleaned up after every test. Also it doesn't make sense
14 // to set the same users on beforeEach() over and over again, so we
15 // separate a little from Cypress' 'Best Practices' here.
16 cy.getUser("admin", "Admin", "User", true, true)
19 adminUser = this.adminUser;
21 cy.getUser("user", "Active", "User", false, true)
24 activeUser = this.activeUser;
28 beforeEach(function () {
30 cy.clearLocalStorage();
33 function setupDockerImage(image_name) {
34 // Create a collection that will be used as a docker image for the tests.
35 cy.createCollection(adminUser.token, {
38 ". d21353cfe035e3e384563ee55eadbb2f+67108864 5c77a43e329b9838cbec18ff42790e57+55605760 0:122714624:sha256:d8309758b8fe2c81034ffc8a10c36460b77db7bc5e7b448c4e5b684f9d95a678.tar\n",
41 .then(function (dockerImage) {
42 // Give read permissions to the active user on the docker image.
43 cy.createLink(adminUser.token, {
44 link_class: "permission",
46 tail_uuid: activeUser.user.uuid,
47 head_uuid: dockerImage.uuid,
49 .as("dockerImagePermission")
51 // Set-up docker image collection tags
52 cy.createLink(activeUser.token, {
53 link_class: "docker_image_repo+tag",
55 head_uuid: dockerImage.uuid,
56 }).as("dockerImageRepoTag");
57 cy.createLink(activeUser.token, {
58 link_class: "docker_image_hash",
59 name: "sha256:d8309758b8fe2c81034ffc8a10c36460b77db7bc5e7b448c4e5b684f9d95a678",
60 head_uuid: dockerImage.uuid,
61 }).as("dockerImageHash");
64 return cy.getAll("@dockerImage", "@dockerImageRepoTag", "@dockerImageHash", "@dockerImagePermission").then(function ([dockerImage]) {
69 function createContainerRequest(user, name, docker_image, command, reuse = false, state = "Uncommitted") {
70 return setupDockerImage(docker_image).then(function (dockerImage) {
71 return cy.createContainerRequest(user.token, {
74 container_image: dockerImage.portable_data_hash, // for some reason, docker_image doesn't work here
75 output_path: "stdout.txt",
77 runtime_constraints: {
93 describe('Multiselect Toolbar', () => {
94 it('shows the appropriate buttons in the toolbar', () => {
96 const msButtonTooltips = [
100 'Copy and re-run process',
110 createContainerRequest(
112 `test_container_request ${Math.floor(Math.random() * 999999)}`,
114 ["echo", "hello world"],
117 ).then(function (containerRequest) {
118 cy.loginAs(activeUser);
119 cy.goToPath(`/processes/${containerRequest.uuid}`);
120 cy.get("[data-cy=process-details]").should("contain", containerRequest.name);
121 cy.get("[data-cy=process-details-attributes-modifiedby-user]").contains(`Active User (${activeUser.user.uuid})`);
122 cy.get("[data-cy=process-details-attributes-runtime-user]").should("not.exist");
123 cy.get("[data-cy=side-panel-tree]").contains("Home Projects").click();
125 cy.get('[data-cy=data-table-row]').contains(containerRequest.name).should('exist').parent().parent().parent().parent().click()
126 cy.get('[data-cy=multiselect-button]').should('have.length', msButtonTooltips.length)
127 for (let i = 0; i < msButtonTooltips.length; i++) {
128 cy.get('[data-cy=multiselect-button]').eq(i).trigger('mouseover');
129 cy.get('body').contains(msButtonTooltips[i]).should('exist')
130 cy.get('[data-cy=multiselect-button]').eq(i).trigger('mouseout');
136 describe("Details panel", function () {
137 it("shows process details", function () {
138 createContainerRequest(
140 `test_container_request ${Math.floor(Math.random() * 999999)}`,
142 ["echo", "hello world"],
145 ).then(function (containerRequest) {
146 cy.loginAs(activeUser);
147 cy.goToPath(`/processes/${containerRequest.uuid}`);
148 cy.get("[data-cy=process-details]").should("contain", containerRequest.name);
149 cy.get("[data-cy=process-details-attributes-modifiedby-user]").contains(`Active User (${activeUser.user.uuid})`);
150 cy.get("[data-cy=process-details-attributes-runtime-user]").should("not.exist");
153 // Fake submitted by another user
154 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
156 res.body.modified_by_user_uuid = "zzzzz-tpzed-000000000000000";
160 createContainerRequest(
162 `test_container_request ${Math.floor(Math.random() * 999999)}`,
164 ["echo", "hello world"],
167 ).then(function (containerRequest) {
168 cy.loginAs(activeUser);
169 cy.goToPath(`/processes/${containerRequest.uuid}`);
170 cy.get("[data-cy=process-details]").should("contain", containerRequest.name);
171 cy.get("[data-cy=process-details-attributes-modifiedby-user]").contains(`zzzzz-tpzed-000000000000000`);
172 cy.get("[data-cy=process-details-attributes-runtime-user]").contains(`Active User (${activeUser.user.uuid})`);
176 it("should show runtime status indicators", function () {
177 // Setup running container with runtime_status error & warning messages
178 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed")
179 .as("containerRequest")
180 .then(function (containerRequest) {
181 expect(containerRequest.state).to.equal("Committed");
182 expect(containerRequest.container_uuid).not.to.be.equal("");
184 cy.getContainer(activeUser.token, containerRequest.container_uuid).then(function (queuedContainer) {
185 expect(queuedContainer.state).to.be.equal("Queued");
187 cy.updateContainer(adminUser.token, containerRequest.container_uuid, {
189 }).then(function (lockedContainer) {
190 expect(lockedContainer.state).to.be.equal("Locked");
192 cy.updateContainer(adminUser.token, lockedContainer.uuid, {
195 error: "Something went wrong",
196 errorDetail: "Process exited with status 1",
197 warning: "Free disk space is low",
200 .as("runningContainer")
201 .then(function (runningContainer) {
202 expect(runningContainer.state).to.be.equal("Running");
203 expect(runningContainer.runtime_status).to.be.deep.equal({
204 error: "Something went wrong",
205 errorDetail: "Process exited with status 1",
206 warning: "Free disk space is low",
211 // Test that the UI shows the error and warning messages
212 cy.getAll("@containerRequest", "@runningContainer").then(function ([containerRequest]) {
213 cy.loginAs(activeUser);
214 cy.goToPath(`/processes/${containerRequest.uuid}`);
215 cy.get("[data-cy=process-runtime-status-error]")
216 .should("contain", "Something went wrong")
217 .and("contain", "Process exited with status 1");
218 cy.get("[data-cy=process-runtime-status-warning]")
219 .should("contain", "Free disk space is low")
220 .and("contain", "No additional warning details available");
223 // Force container_count for testing
224 let containerCount = 2;
225 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
227 res.body.container_count = containerCount;
231 cy.getAll("@containerRequest").then(function ([containerRequest]) {
232 cy.goToPath(`/processes/${containerRequest.uuid}`);
233 cy.get("[data-cy=process-runtime-status-retry-warning]", { timeout: 7000 }).should("contain", "Process retried 1 time");
236 cy.getAll("@containerRequest").then(function ([containerRequest]) {
238 cy.goToPath(`/processes/${containerRequest.uuid}`);
239 cy.get("[data-cy=process-runtime-status-retry-warning]", { timeout: 7000 }).should("contain", "Process retried 2 times");
243 it("allows copying processes", function () {
244 const crName = "first_container_request";
245 const copiedCrName = "copied_container_request";
246 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
247 cy.loginAs(activeUser);
248 cy.goToPath(`/processes/${containerRequest.uuid}`);
249 cy.get("[data-cy=process-details]").should("contain", crName);
251 cy.get("[data-cy=process-details]").find('button[title="More options"]').click();
252 cy.get("ul[data-cy=context-menu]").contains("Copy and re-run process").click();
255 cy.get("[data-cy=form-dialog]").within(() => {
256 cy.get("input[name=name]").clear().type(copiedCrName);
257 cy.get("[data-cy=projects-tree-home-tree-picker]").click();
258 cy.get("[data-cy=form-submit-btn]").click();
261 cy.get("[data-cy=process-details]").should("contain", copiedCrName);
262 cy.get("[data-cy=process-details]").find("button").contains("Run");
265 const getFakeContainer = fakeContainerUuid => ({
266 href: `/containers/${fakeContainerUuid}`,
267 kind: "arvados#container",
268 etag: "ecfosljpnxfari9a8m7e4yv06",
269 uuid: fakeContainerUuid,
270 owner_uuid: "zzzzz-tpzed-000000000000000",
271 created_at: "2023-02-13T15:55:47.308915000Z",
272 modified_by_client_uuid: "zzzzz-ozdt8-q6dzdi1lcc03155",
273 modified_by_user_uuid: "zzzzz-tpzed-000000000000000",
274 modified_at: "2023-02-15T19:12:45.987086000Z",
276 "arvados-cwl-runner",
279 "--project-uuid=zzzzz-j7d0g-yr18k784zplfeza",
280 "/var/lib/cwl/workflow.json#main",
281 "/var/lib/cwl/cwl.input.json",
283 container_image: "4ad7d11381df349e464694762db14e04+303",
284 cwd: "/var/spool/cwl",
288 locked_by_uuid: null,
291 output_path: "/var/spool/cwl",
293 runtime_constraints: {
298 hardware_capability: "",
300 keep_cache_disk: 2147483648,
308 scheduling_parameters: {
313 runtime_user_uuid: "zzzzz-tpzed-vllbpebicy84rd5",
314 runtime_auth_scopes: ["all"],
316 gateway_address: null,
317 interactive_session_started: false,
318 output_storage_classes: ["default"],
319 output_properties: {},
321 subrequests_cost: 0.0,
324 it("shows cancel button when appropriate", function () {
325 // Ignore collection requests
327 { method: "GET", url: `**/arvados/v1/collections/*` },
334 // Uncommitted container
335 const crUncommitted = `Test process ${Math.floor(Math.random() * 999999)}`;
336 createContainerRequest(activeUser, crUncommitted, "arvados/jobs", ["echo", "hello world"], false, "Uncommitted").then(function (
339 // Navigate to process and verify run / cancel button
340 cy.goToPath(`/processes/${containerRequest.uuid}`);
342 cy.get("[data-cy=process-details]").should("contain", crUncommitted);
343 cy.get("[data-cy=process-run-button]").should("exist");
344 cy.get("[data-cy=process-cancel-button]").should("not.exist");
348 const crQueued = `Test process ${Math.floor(Math.random() * 999999)}`;
349 const fakeCrUuid = "zzzzz-dz642-000000000000001";
350 createContainerRequest(activeUser, crQueued, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
353 // Fake container uuid
354 cy.intercept({ method: "GET", url: `**/arvados/v1/container_requests/${containerRequest.uuid}` }, req => {
356 res.body.output_uuid = fakeCrUuid;
357 res.body.priority = 500;
358 res.body.state = "Committed";
363 const container = getFakeContainer(fakeCrUuid);
365 { method: "GET", url: `**/arvados/v1/container/${fakeCrUuid}` },
368 body: { ...container, state: "Queued", priority: 500 },
372 // Navigate to process and verify cancel button
373 cy.goToPath(`/processes/${containerRequest.uuid}`);
375 cy.get("[data-cy=process-details]").should("contain", crQueued);
376 cy.get("[data-cy=process-cancel-button]").contains("Cancel");
380 const crLocked = `Test process ${Math.floor(Math.random() * 999999)}`;
381 const fakeCrLockedUuid = "zzzzz-dz642-000000000000002";
382 createContainerRequest(activeUser, crLocked, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
385 // Fake container uuid
386 cy.intercept({ method: "GET", url: `**/arvados/v1/container_requests/${containerRequest.uuid}` }, req => {
388 res.body.output_uuid = fakeCrLockedUuid;
389 res.body.priority = 500;
390 res.body.state = "Committed";
395 const container = getFakeContainer(fakeCrLockedUuid);
397 { method: "GET", url: `**/arvados/v1/container/${fakeCrLockedUuid}` },
400 body: { ...container, state: "Locked", priority: 500 },
404 // Navigate to process and verify cancel button
405 cy.goToPath(`/processes/${containerRequest.uuid}`);
407 cy.get("[data-cy=process-details]").should("contain", crLocked);
408 cy.get("[data-cy=process-cancel-button]").contains("Cancel");
412 const crOnHold = `Test process ${Math.floor(Math.random() * 999999)}`;
413 const fakeCrOnHoldUuid = "zzzzz-dz642-000000000000003";
414 createContainerRequest(activeUser, crOnHold, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
417 // Fake container uuid
418 cy.intercept({ method: "GET", url: `**/arvados/v1/container_requests/${containerRequest.uuid}` }, req => {
420 res.body.output_uuid = fakeCrOnHoldUuid;
421 res.body.priority = 0;
422 res.body.state = "Committed";
427 const container = getFakeContainer(fakeCrOnHoldUuid);
429 { method: "GET", url: `**/arvados/v1/container/${fakeCrOnHoldUuid}` },
432 body: { ...container, state: "Queued", priority: 0 },
436 // Navigate to process and verify cancel button
437 cy.goToPath(`/processes/${containerRequest.uuid}`);
439 cy.get("[data-cy=process-details]").should("contain", crOnHold);
440 cy.get("[data-cy=process-run-button]").should("exist");
441 cy.get("[data-cy=process-cancel-button]").should("not.exist");
446 describe("Logs panel", function () {
447 it("shows live process logs", function () {
448 cy.intercept({ method: "GET", url: "**/arvados/v1/containers/*" }, req => {
450 res.body.state = ContainerState.RUNNING;
454 const crName = "test_container_request";
455 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
456 // Create empty log file before loading process page
457 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [""]);
459 cy.loginAs(activeUser);
460 cy.goToPath(`/processes/${containerRequest.uuid}`);
461 cy.get("[data-cy=process-details]").should("contain", crName);
462 cy.get("[data-cy=process-logs]").should("contain", "No logs yet").and("not.contain", "hello world");
465 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", ["2023-07-18T20:14:48.128642814Z hello world"]).then(() => {
466 cy.get("[data-cy=process-logs]", { timeout: 7000 }).should("not.contain", "No logs yet").and("contain", "hello world");
469 // Append new log line to different file
470 cy.appendLog(adminUser.token, containerRequest.uuid, "stderr.txt", ["2023-07-18T20:14:49.128642814Z hello new line"]).then(() => {
471 cy.get("[data-cy=process-logs]", { timeout: 7000 }).should("not.contain", "No logs yet").and("contain", "hello new line");
476 it("filters process logs by event type", function () {
477 const nodeInfoLogs = [
479 "Linux compute-99cb150b26149780de44b929577e1aed-19rgca8vobuvc4p 5.4.0-1059-azure #62~18.04.1-Ubuntu SMP Tue Sep 14 17:53:18 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux",
482 "vendor_id : GenuineIntel",
485 "model name : Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz",
487 const crunchRunLogs = [
488 "2022-03-22T13:56:22.542417997Z using local keepstore process (pid 3733) at http://localhost:46837, writing logs to keepstore.txt in log collection",
489 "2022-03-22T13:56:26.237571754Z crunch-run 2.4.0~dev20220321141729 (go1.17.1) started",
490 "2022-03-22T13:56:26.244704134Z crunch-run process has uid=0(root) gid=0(root) groups=0(root)",
491 "2022-03-22T13:56:26.244862836Z Executing container 'zzzzz-dz642-1wokwvcct9s9du3' using docker runtime",
492 "2022-03-22T13:56:26.245037738Z Executing on host 'compute-99cb150b26149780de44b929577e1aed-19rgca8vobuvc4p'",
495 "2022-03-22T13:56:22.542417987Z Lorem ipsum dolor sit amet, consectetur adipiscing elit. Donec dui nisi, hendrerit porta sapien a, pretium dignissim purus.",
496 "2022-03-22T13:56:22.542417997Z Integer viverra, mauris finibus aliquet ultricies, dui mauris cursus justo, ut venenatis nibh ex eget neque.",
497 "2022-03-22T13:56:22.542418007Z In hac habitasse platea dictumst.",
498 "2022-03-22T13:56:22.542418027Z Fusce fringilla turpis id accumsan faucibus. Donec congue congue ex non posuere. In semper mi quis tristique rhoncus.",
499 "2022-03-22T13:56:22.542418037Z Interdum et malesuada fames ac ante ipsum primis in faucibus.",
500 "2022-03-22T13:56:22.542418047Z Quisque fermentum tortor ex, ut suscipit velit feugiat faucibus.",
501 "2022-03-22T13:56:22.542418057Z Donec vitae porta risus, at luctus nulla. Mauris gravida iaculis ipsum, id sagittis tortor egestas ac.",
502 "2022-03-22T13:56:22.542418067Z Maecenas condimentum volutpat nulla. Integer lacinia maximus risus eu posuere.",
503 "2022-03-22T13:56:22.542418077Z Donec vitae leo id augue gravida bibendum.",
504 "2022-03-22T13:56:22.542418087Z Nam libero libero, pretium ac faucibus elementum, mattis nec ex.",
505 "2022-03-22T13:56:22.542418097Z Nullam id laoreet nibh. Vivamus tellus metus, pretium quis justo ut, bibendum varius metus. Pellentesque vitae accumsan lorem, quis tincidunt augue.",
506 "2022-03-22T13:56:22.542418107Z Aliquam viverra nisi nulla, et efficitur dolor mattis in.",
507 "2022-03-22T13:56:22.542418117Z Sed at enim sit amet nulla tincidunt mattis. Aenean eget aliquet ex, non ultrices ex. Nulla ex tortor, vestibulum aliquam tempor ac, aliquam vel est.",
508 "2022-03-22T13:56:22.542418127Z Fusce auctor faucibus libero id venenatis. Etiam sodales, odio eu cursus efficitur, quam sem blandit ex, quis porttitor enim dui quis lectus. In id tincidunt felis.",
509 "2022-03-22T13:56:22.542418137Z Phasellus non ex quis arcu tempus faucibus molestie in sapien.",
510 "2022-03-22T13:56:22.542418147Z Duis tristique semper dolor, vitae pulvinar risus.",
511 "2022-03-22T13:56:22.542418157Z Aliquam tortor elit, luctus nec tortor eget, porta tristique nulla.",
512 "2022-03-22T13:56:22.542418167Z Nulla eget mollis ipsum.",
515 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
518 cy.appendLog(adminUser.token, containerRequest.uuid, "node-info.txt", nodeInfoLogs).as("nodeInfoLogs");
519 cy.appendLog(adminUser.token, containerRequest.uuid, "crunch-run.txt", crunchRunLogs).as("crunchRunLogs");
520 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", stdoutLogs).as("stdoutLogs");
522 cy.getAll("@stdoutLogs", "@nodeInfoLogs", "@crunchRunLogs").then(function () {
523 cy.loginAs(activeUser);
524 cy.goToPath(`/processes/${containerRequest.uuid}`);
525 // Should show main logs by default
526 cy.get("[data-cy=process-logs-filter]", { timeout: 7000 }).should("contain", "Main logs");
527 cy.get("[data-cy=process-logs]")
528 .should("contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
529 .and("not.contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
530 .and("contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
532 cy.get("[data-cy=process-logs-filter]").click();
533 cy.get("body").contains("li", "All logs").click();
534 cy.get("[data-cy=process-logs]")
535 .should("contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
536 .and("contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
537 .and("contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
538 // Select 'node-info' logs
539 cy.get("[data-cy=process-logs-filter]").click();
540 cy.get("body").contains("li", "node-info").click();
541 cy.get("[data-cy=process-logs]")
542 .should("not.contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
543 .and("contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
544 .and("not.contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
545 // Select 'stdout' logs
546 cy.get("[data-cy=process-logs-filter]").click();
547 cy.get("body").contains("li", "stdout").click();
548 cy.get("[data-cy=process-logs]")
549 .should("contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
550 .and("not.contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
551 .and("not.contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
556 it("sorts combined logs", function () {
557 const crName = "test_container_request";
558 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
559 cy.appendLog(adminUser.token, containerRequest.uuid, "node-info.txt", [
567 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [
568 "2023-07-18T20:14:48.128642814Z first",
569 "2023-07-18T20:14:49.128642814Z third",
572 cy.appendLog(adminUser.token, containerRequest.uuid, "stderr.txt", ["2023-07-18T20:14:48.528642814Z second"]).as("stderr");
574 cy.loginAs(activeUser);
575 cy.goToPath(`/processes/${containerRequest.uuid}`);
576 cy.get("[data-cy=process-details]").should("contain", crName);
577 cy.get("[data-cy=process-logs]").should("contain", "No logs yet");
579 cy.getAll("@node-info", "@stdout", "@stderr").then(() => {
580 // Verify sorted main logs
581 cy.get("[data-cy=process-logs] pre", { timeout: 7000 }).eq(0).should("contain", "2023-07-18T20:14:48.128642814Z first");
582 cy.get("[data-cy=process-logs] pre").eq(1).should("contain", "2023-07-18T20:14:48.528642814Z second");
583 cy.get("[data-cy=process-logs] pre").eq(2).should("contain", "2023-07-18T20:14:49.128642814Z third");
585 // Switch to All logs
586 cy.get("[data-cy=process-logs-filter]").click();
587 cy.get("body").contains("li", "All logs").click();
588 // Verify non-sorted lines were preserved
589 cy.get("[data-cy=process-logs] pre").eq(0).should("contain", "3: nodeinfo 1");
590 cy.get("[data-cy=process-logs] pre").eq(1).should("contain", "2: nodeinfo 2");
591 cy.get("[data-cy=process-logs] pre").eq(2).should("contain", "1: nodeinfo 3");
592 cy.get("[data-cy=process-logs] pre").eq(3).should("contain", "2: nodeinfo 4");
593 cy.get("[data-cy=process-logs] pre").eq(4).should("contain", "3: nodeinfo 5");
594 // Verify sorted logs
595 cy.get("[data-cy=process-logs] pre").eq(5).should("contain", "2023-07-18T20:14:48.128642814Z first");
596 cy.get("[data-cy=process-logs] pre").eq(6).should("contain", "2023-07-18T20:14:48.528642814Z second");
597 cy.get("[data-cy=process-logs] pre").eq(7).should("contain", "2023-07-18T20:14:49.128642814Z third");
602 it("preserves original ordering of lines within the same log type", function () {
603 const crName = "test_container_request";
604 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
605 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [
607 "2023-07-18T20:14:46.000000000Z A out 1",
608 // Comes fourth in a contiguous block
609 "2023-07-18T20:14:48.128642814Z A out 2",
610 "2023-07-18T20:14:48.128642814Z X out 3",
611 "2023-07-18T20:14:48.128642814Z A out 4",
614 cy.appendLog(adminUser.token, containerRequest.uuid, "stderr.txt", [
616 "2023-07-18T20:14:47.000000000Z Z err 1",
617 // Comes third in a contiguous block
618 "2023-07-18T20:14:48.128642814Z B err 2",
619 "2023-07-18T20:14:48.128642814Z C err 3",
620 "2023-07-18T20:14:48.128642814Z Y err 4",
621 "2023-07-18T20:14:48.128642814Z Z err 5",
622 "2023-07-18T20:14:48.128642814Z A err 6",
625 cy.loginAs(activeUser);
626 cy.goToPath(`/processes/${containerRequest.uuid}`);
627 cy.get("[data-cy=process-details]").should("contain", crName);
628 cy.get("[data-cy=process-logs]").should("contain", "No logs yet");
630 cy.getAll("@stdout", "@stderr").then(() => {
631 // Switch to All logs
632 cy.get("[data-cy=process-logs-filter]").click();
633 cy.get("body").contains("li", "All logs").click();
634 // Verify sorted logs
635 cy.get("[data-cy=process-logs] pre").eq(0).should("contain", "2023-07-18T20:14:46.000000000Z A out 1");
636 cy.get("[data-cy=process-logs] pre").eq(1).should("contain", "2023-07-18T20:14:47.000000000Z Z err 1");
637 cy.get("[data-cy=process-logs] pre").eq(2).should("contain", "2023-07-18T20:14:48.128642814Z B err 2");
638 cy.get("[data-cy=process-logs] pre").eq(3).should("contain", "2023-07-18T20:14:48.128642814Z C err 3");
639 cy.get("[data-cy=process-logs] pre").eq(4).should("contain", "2023-07-18T20:14:48.128642814Z Y err 4");
640 cy.get("[data-cy=process-logs] pre").eq(5).should("contain", "2023-07-18T20:14:48.128642814Z Z err 5");
641 cy.get("[data-cy=process-logs] pre").eq(6).should("contain", "2023-07-18T20:14:48.128642814Z A err 6");
642 cy.get("[data-cy=process-logs] pre").eq(7).should("contain", "2023-07-18T20:14:48.128642814Z A out 2");
643 cy.get("[data-cy=process-logs] pre").eq(8).should("contain", "2023-07-18T20:14:48.128642814Z X out 3");
644 cy.get("[data-cy=process-logs] pre").eq(9).should("contain", "2023-07-18T20:14:48.128642814Z A out 4");
649 it("correctly generates sniplines", function () {
650 const SNIPLINE = `================ ✀ ================ ✀ ========= Some log(s) were skipped ========= ✀ ================ ✀ ================`;
651 const crName = "test_container_request";
652 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
653 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [
654 "X".repeat(63999) + "_" + "O".repeat(100) + "_" + "X".repeat(63999),
657 cy.loginAs(activeUser);
658 cy.goToPath(`/processes/${containerRequest.uuid}`);
659 cy.get("[data-cy=process-details]").should("contain", crName);
660 cy.get("[data-cy=process-logs]").should("contain", "No logs yet");
662 // Switch to stdout since lines are unsortable (no timestamp)
663 cy.get("[data-cy=process-logs-filter]").click();
664 cy.get("body").contains("li", "stdout").click();
666 cy.getAll("@stdout").then(() => {
667 // Verify first 64KB and snipline
668 cy.get("[data-cy=process-logs] pre", { timeout: 7000 })
670 .should("contain", "X".repeat(63999) + "_\n" + SNIPLINE);
672 cy.get("[data-cy=process-logs] pre")
674 .should("contain", "_" + "X".repeat(63999));
675 // Verify none of the Os got through
676 cy.get("[data-cy=process-logs] pre").should("not.contain", "O");
682 describe("I/O panel", function () {
686 id: "#main/input_file",
687 label: "Label Description",
692 basename: "input1.tar",
694 location: "keep:00000000000000000000000000000000+01/input1.tar",
697 basename: "input1-2.txt",
699 location: "keep:00000000000000000000000000000000+01/input1-2.txt",
702 basename: "input1-3.txt",
704 location: "keep:00000000000000000000000000000000+01/input1-3.txt",
707 basename: "input1-4.txt",
709 location: "keep:00000000000000000000000000000000+01/input1-4.txt",
717 id: "#main/input_dir",
718 doc: "Doc Description",
723 basename: "11111111111111111111111111111111+01",
725 location: "keep:11111111111111111111111111111111+01",
731 id: "#main/input_bool",
732 doc: ["Doc desc 1", "Doc desc 2"],
741 id: "#main/input_int",
750 id: "#main/input_long",
759 id: "#main/input_float",
768 id: "#main/input_double",
777 id: "#main/input_string",
781 input_string: "Hello World",
786 id: "#main/input_file_array",
795 basename: "input2.tar",
797 location: "keep:00000000000000000000000000000000+02/input2.tar",
800 basename: "input3.tar",
802 location: "keep:00000000000000000000000000000000+03/input3.tar",
805 basename: "input3-2.txt",
807 location: "keep:00000000000000000000000000000000+03/input3-2.txt",
812 $import: "import_path",
819 id: "#main/input_dir_array",
828 basename: "11111111111111111111111111111111+02",
830 location: "keep:11111111111111111111111111111111+02",
833 basename: "11111111111111111111111111111111+03",
835 location: "keep:11111111111111111111111111111111+03",
838 $import: "import_path",
845 id: "#main/input_int_array",
857 $import: "import_path",
864 id: "#main/input_long_array",
875 $import: "import_path",
882 id: "#main/input_float_array",
894 $import: "import_path",
901 id: "#main/input_double_array",
908 input_double_array: [
913 $import: "import_path",
920 id: "#main/input_string_array",
927 input_string_array: [
932 $import: "import_path",
939 id: "#main/input_bool_include",
943 input_bool_include: {
944 $include: "include_path",
950 id: "#main/input_int_include",
955 $include: "include_path",
961 id: "#main/input_float_include",
965 input_float_include: {
966 $include: "include_path",
972 id: "#main/input_string_include",
976 input_string_include: {
977 $include: "include_path",
983 id: "#main/input_file_include",
987 input_file_include: {
988 $include: "include_path",
994 id: "#main/input_directory_include",
998 input_directory_include: {
999 $include: "include_path",
1005 id: "#main/input_file_url",
1010 basename: "index.html",
1012 location: "http://example.com/index.html",
1018 const testOutputs = [
1021 id: "#main/output_file",
1022 label: "Label Description",
1027 basename: "cat.png",
1029 location: "cat.png",
1035 id: "#main/output_file_with_secondary",
1036 doc: "Doc Description",
1040 output_file_with_secondary: {
1041 basename: "main.dat",
1043 location: "main.dat",
1046 basename: "secondary.dat",
1048 location: "secondary.dat",
1051 basename: "secondary2.dat",
1053 location: "secondary2.dat",
1061 id: "#main/output_dir",
1062 doc: ["Doc desc 1", "Doc desc 2"],
1067 basename: "outdir1",
1069 location: "outdir1",
1075 id: "#main/output_bool",
1084 id: "#main/output_int",
1093 id: "#main/output_long",
1102 id: "#main/output_float",
1106 output_float: 100.5,
1111 id: "#main/output_double",
1115 output_double: 100.3,
1120 id: "#main/output_string",
1124 output_string: "Hello output",
1129 id: "#main/output_file_array",
1136 output_file_array: [
1138 basename: "output2.tar",
1140 location: "output2.tar",
1143 basename: "output3.tar",
1145 location: "output3.tar",
1152 id: "#main/output_dir_array",
1161 basename: "outdir2",
1163 location: "outdir2",
1166 basename: "outdir3",
1168 location: "outdir3",
1175 id: "#main/output_int_array",
1182 output_int_array: [10, 11, 12],
1187 id: "#main/output_long_array",
1194 output_long_array: [51, 52],
1199 id: "#main/output_float_array",
1206 output_float_array: [100.2, 100.4, 100.6],
1211 id: "#main/output_double_array",
1218 output_double_array: [100.1, 100.2, 100.3],
1223 id: "#main/output_string_array",
1230 output_string_array: ["Hello", "Output", "!"],
1235 const verifyIOParameter = (name, label, doc, val, collection, multipleRows) => {
1239 .within($mainRow => {
1240 label && cy.contains(label);
1243 cy.get($mainRow).nextUntil('[data-cy="process-io-param"]').as("secondaryRows");
1245 if (Array.isArray(val)) {
1246 val.forEach(v => cy.get("@secondaryRows").contains(v));
1248 cy.get("@secondaryRows").contains(val);
1252 cy.get("@secondaryRows").contains(collection);
1256 if (Array.isArray(val)) {
1257 val.forEach(v => cy.contains(v));
1263 cy.contains(collection);
1269 const verifyIOParameterImage = (name, url) => {
1274 cy.get('[alt="Inline Preview"]')
1275 .should("be.visible")
1277 expect($img[0].naturalWidth).to.be.greaterThan(0);
1278 expect($img[0].src).contains(url);
1283 it("displays IO parameters with keep links and previews", function () {
1284 // Create output collection for real files
1285 cy.createCollection(adminUser.token, {
1286 name: `Test collection ${Math.floor(Math.random() * 999999)}`,
1287 owner_uuid: activeUser.user.uuid,
1288 }).then(testOutputCollection => {
1289 cy.loginAs(activeUser);
1291 cy.goToPath(`/collections/${testOutputCollection.uuid}`);
1293 cy.get("[data-cy=upload-button]").click();
1295 cy.fixture("files/cat.png", "base64").then(content => {
1296 cy.get("[data-cy=drag-and-drop]").upload(content, "cat.png");
1297 cy.get("[data-cy=form-submit-btn]").click();
1298 cy.waitForDom().get("[data-cy=form-submit-btn]").should("not.exist");
1299 // Confirm final collection state.
1300 cy.get("[data-cy=collection-files-panel]").contains("cat.png").should("exist");
1303 cy.getCollection(activeUser.token, testOutputCollection.uuid).as("testOutputCollection");
1306 // Get updated collection pdh
1307 cy.getAll("@testOutputCollection").then(([testOutputCollection]) => {
1308 // Add output uuid and inputs to container request
1309 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
1311 res.body.output_uuid = testOutputCollection.uuid;
1312 res.body.mounts["/var/lib/cwl/cwl.input.json"] = {
1313 content: testInputs.map(param => param.input).reduce((acc, val) => Object.assign(acc, val), {}),
1315 res.body.mounts["/var/lib/cwl/workflow.json"] = {
1320 inputs: testInputs.map(input => input.definition),
1321 outputs: testOutputs.map(output => output.definition),
1329 // Stub fake output collection
1331 { method: "GET", url: `**/arvados/v1/collections/${testOutputCollection.uuid}*` },
1335 uuid: testOutputCollection.uuid,
1336 portable_data_hash: testOutputCollection.portable_data_hash,
1341 // Stub fake output json
1343 { method: "GET", url: "**/c%3Dzzzzz-4zz18-zzzzzzzzzzzzzzz/cwl.output.json" },
1346 body: testOutputs.map(param => param.output).reduce((acc, val) => Object.assign(acc, val), {}),
1350 // Stub webdav response, points to output json
1352 { method: "PROPFIND", url: "*" },
1354 fixture: "webdav-propfind-outputs.xml",
1359 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed").as(
1363 cy.getAll("@containerRequest", "@testOutputCollection").then(function ([containerRequest, testOutputCollection]) {
1364 cy.goToPath(`/processes/${containerRequest.uuid}`);
1365 cy.get("[data-cy=process-io-card] h6")
1367 .parents("[data-cy=process-io-card]")
1369 verifyIOParameter("input_file", null, "Label Description", "input1.tar", "00000000000000000000000000000000+01");
1370 verifyIOParameter("input_file", null, "Label Description", "input1-2.txt", undefined, true);
1371 verifyIOParameter("input_file", null, "Label Description", "input1-3.txt", undefined, true);
1372 verifyIOParameter("input_file", null, "Label Description", "input1-4.txt", undefined, true);
1373 verifyIOParameter("input_dir", null, "Doc Description", "/", "11111111111111111111111111111111+01");
1374 verifyIOParameter("input_bool", null, "Doc desc 1, Doc desc 2", "true");
1375 verifyIOParameter("input_int", null, null, "1");
1376 verifyIOParameter("input_long", null, null, "1");
1377 verifyIOParameter("input_float", null, null, "1.5");
1378 verifyIOParameter("input_double", null, null, "1.3");
1379 verifyIOParameter("input_string", null, null, "Hello World");
1380 verifyIOParameter("input_file_array", null, null, "input2.tar", "00000000000000000000000000000000+02");
1381 verifyIOParameter("input_file_array", null, null, "input3.tar", undefined, true);
1382 verifyIOParameter("input_file_array", null, null, "input3-2.txt", undefined, true);
1383 verifyIOParameter("input_file_array", null, null, "Cannot display value", undefined, true);
1384 verifyIOParameter("input_dir_array", null, null, "/", "11111111111111111111111111111111+02");
1385 verifyIOParameter("input_dir_array", null, null, "/", "11111111111111111111111111111111+03", true);
1386 verifyIOParameter("input_dir_array", null, null, "Cannot display value", undefined, true);
1387 verifyIOParameter("input_int_array", null, null, ["1", "3", "5", "Cannot display value"]);
1388 verifyIOParameter("input_long_array", null, null, ["10", "20", "Cannot display value"]);
1389 verifyIOParameter("input_float_array", null, null, ["10.2", "10.4", "10.6", "Cannot display value"]);
1390 verifyIOParameter("input_double_array", null, null, ["20.1", "20.2", "20.3", "Cannot display value"]);
1391 verifyIOParameter("input_string_array", null, null, ["Hello", "World", "!", "Cannot display value"]);
1392 verifyIOParameter("input_bool_include", null, null, "Cannot display value");
1393 verifyIOParameter("input_int_include", null, null, "Cannot display value");
1394 verifyIOParameter("input_float_include", null, null, "Cannot display value");
1395 verifyIOParameter("input_string_include", null, null, "Cannot display value");
1396 verifyIOParameter("input_file_include", null, null, "Cannot display value");
1397 verifyIOParameter("input_directory_include", null, null, "Cannot display value");
1398 verifyIOParameter("input_file_url", null, null, "http://example.com/index.html");
1400 cy.get("[data-cy=process-io-card] h6")
1401 .contains("Outputs")
1402 .parents("[data-cy=process-io-card]")
1404 cy.get(ctx).scrollIntoView();
1405 cy.get('[data-cy="io-preview-image-toggle"]').click({ waitForAnimations: false });
1406 const outPdh = testOutputCollection.portable_data_hash;
1408 verifyIOParameter("output_file", null, "Label Description", "cat.png", `${outPdh}`);
1409 verifyIOParameterImage("output_file", `/c=${outPdh}/cat.png`);
1410 verifyIOParameter("output_file_with_secondary", null, "Doc Description", "main.dat", `${outPdh}`);
1411 verifyIOParameter("output_file_with_secondary", null, "Doc Description", "secondary.dat", undefined, true);
1412 verifyIOParameter("output_file_with_secondary", null, "Doc Description", "secondary2.dat", undefined, true);
1413 verifyIOParameter("output_dir", null, "Doc desc 1, Doc desc 2", "outdir1", `${outPdh}`);
1414 verifyIOParameter("output_bool", null, null, "true");
1415 verifyIOParameter("output_int", null, null, "1");
1416 verifyIOParameter("output_long", null, null, "1");
1417 verifyIOParameter("output_float", null, null, "100.5");
1418 verifyIOParameter("output_double", null, null, "100.3");
1419 verifyIOParameter("output_string", null, null, "Hello output");
1420 verifyIOParameter("output_file_array", null, null, "output2.tar", `${outPdh}`);
1421 verifyIOParameter("output_file_array", null, null, "output3.tar", undefined, true);
1422 verifyIOParameter("output_dir_array", null, null, "outdir2", `${outPdh}`);
1423 verifyIOParameter("output_dir_array", null, null, "outdir3", undefined, true);
1424 verifyIOParameter("output_int_array", null, null, ["10", "11", "12"]);
1425 verifyIOParameter("output_long_array", null, null, ["51", "52"]);
1426 verifyIOParameter("output_float_array", null, null, ["100.2", "100.4", "100.6"]);
1427 verifyIOParameter("output_double_array", null, null, ["100.1", "100.2", "100.3"]);
1428 verifyIOParameter("output_string_array", null, null, ["Hello", "Output", "!"]);
1433 it("displays IO parameters with no value", function () {
1434 const fakeOutputUUID = "zzzzz-4zz18-abcdefghijklmno";
1435 const fakeOutputPDH = "11111111111111111111111111111111+99/";
1437 cy.loginAs(activeUser);
1439 // Add output uuid and inputs to container request
1440 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
1442 res.body.output_uuid = fakeOutputUUID;
1443 res.body.mounts["/var/lib/cwl/cwl.input.json"] = {
1446 res.body.mounts["/var/lib/cwl/workflow.json"] = {
1451 inputs: testInputs.map(input => input.definition),
1452 outputs: testOutputs.map(output => output.definition),
1460 // Stub fake output collection
1462 { method: "GET", url: `**/arvados/v1/collections/${fakeOutputUUID}*` },
1466 uuid: fakeOutputUUID,
1467 portable_data_hash: fakeOutputPDH,
1472 // Stub fake output json
1474 { method: "GET", url: `**/c%3D${fakeOutputUUID}/cwl.output.json` },
1481 cy.readFile("cypress/fixtures/webdav-propfind-outputs.xml").then(data => {
1482 // Stub webdav response, points to output json
1484 { method: "PROPFIND", url: "*" },
1487 body: data.replace(/zzzzz-4zz18-zzzzzzzzzzzzzzz/g, fakeOutputUUID),
1492 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed").as(
1496 cy.getAll("@containerRequest").then(function ([containerRequest]) {
1497 cy.goToPath(`/processes/${containerRequest.uuid}`);
1500 cy.get("[data-cy=process-io-card] h6")
1502 .parents("[data-cy=process-io-card]")
1506 cy.get("tbody tr").each(item => {
1507 cy.wrap(item).contains("No value");
1510 cy.get("[data-cy=process-io-card] h6")
1511 .contains("Outputs")
1512 .parents("[data-cy=process-io-card]")
1514 cy.get("tbody tr").each(item => {
1515 cy.wrap(item).contains("No value");