2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --only FOO Do not test anything except the FOO component.
23 --temp DIR Install components and dependencies under DIR instead of
24 making a new temporary directory. Implies --leave-temp.
25 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
26 Instead, show the path to give as --temp to reuse them in
27 subsequent invocations.
28 --repeat N Repeat each install/test step until it succeeds N times.
29 --retry Prompt to retry if an install or test suite fails.
30 --skip-install Do not run any install steps. Just run tests.
31 You should provide GOPATH, GEMHOME, and VENVDIR options
32 from a previous invocation if you use this option.
33 --only-install Run specific install step
34 --short Skip (or scale down) some slow tests.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with api server config files to copy into source tree.
37 (If none given, leave config files alone in source tree.)
38 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
39 Restrict apiserver tests to the given file
40 sdk/python_test="--test-suite tests.test_keep_locator"
41 Restrict Python SDK tests to the given class
42 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
43 Restrict Workbench tests to the given file
44 services/arv-git-httpd_test="-check.vv"
45 Show all log messages, even when tests pass (also works
46 with services/keepstore_test etc.)
48 Print more debug messages
49 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
50 *_test, and other examples shown above.
52 Assuming --skip-install is not given, all components are installed
53 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
54 test suites depend on other components being installed, and installing
55 everything tends to be quicker than debugging dependencies.
57 As a special concession to the current CI server config, CONFIGSRC
58 defaults to $HOME/arvados-api-server if that directory exists.
60 More information and background:
62 https://arvados.org/projects/arvados/wiki/Running_tests
67 apps/workbench_units (*)
68 apps/workbench_functionals (*)
69 apps/workbench_integration (*)
70 apps/workbench_benchmark
71 apps/workbench_profile
81 lib/dispatchcloud/container
82 lib/dispatchcloud/scheduler
83 lib/dispatchcloud/ssh_executor
84 lib/dispatchcloud/worker
86 services/arv-git-httpd
88 services/dockercleaner
97 services/nodemanager_integration
99 services/crunch-dispatch-local
100 services/crunch-dispatch-slurm
122 tools/crunchstat-summary
125 tools/keep-block-check
127 (*) apps/workbench is shorthand for apps/workbench_units +
128 apps/workbench_functionals + apps/workbench_integration
132 # First make sure to remove any ARVADOS_ variables from the calling
133 # environment that could interfere with the tests.
134 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
136 # Reset other variables that could affect our [tests'] behavior by
153 if [[ -z "$temp" ]]; then
154 # we didn't even get as far as making a temp dir
156 elif [[ -z "$temp_preserve" ]]; then
159 echo "Leaving behind temp dirs in $temp"
165 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
171 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
172 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
174 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
181 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
182 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
183 echo Checking dependencies:
184 echo -n 'virtualenv: '
185 virtualenv --version \
186 || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
189 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
192 || fatal "No go binary. See http://golang.org/doc/install"
193 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 10 ]] \
194 || fatal "Go >= 1.10 required. See http://golang.org/doc/install"
196 gcc --version | egrep ^gcc \
197 || fatal "No gcc. Try: apt-get install build-essential"
199 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
200 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
202 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
203 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
204 echo -n 'Python2 pyconfig.h: '
205 find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
206 || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
207 echo -n 'Python3 pyconfig.h: '
208 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
209 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
211 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
212 || fatal "No nginx. Try: apt-get install nginx"
214 perl -v | grep version \
215 || fatal "No perl. Try: apt-get install perl"
216 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
217 echo -n "perl $mod: "
218 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
219 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
223 || fatal "No gitolite. Try: apt-get install gitolite3"
226 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
228 cadaver --version | grep -w cadaver \
229 || fatal "No cadaver. Try: apt-get install cadaver"
230 echo -n 'libattr1 xattr.h: '
231 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
232 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
233 echo -n 'libcurl curl.h: '
234 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
235 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
236 echo -n 'libpq libpq-fe.h: '
237 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
238 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
239 echo -n 'services/api/config/database.yml: '
240 if [[ ! -f "$WORKSPACE/services/api/config/database.yml" ]]; then
241 fatal "Please provide a database.yml file for the test suite"
245 echo -n 'postgresql: '
246 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
247 echo -n 'phantomjs: '
248 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
250 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
252 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
253 echo -n 'geckodriver: '
254 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
256 if [[ "$NEED_SDK_R" = true ]]; then
259 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
261 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
262 # needed for roxygen2, needed for devtools, needed for R sdk
263 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
264 # needed for pkgdown, builds R SDK doc pages
265 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
270 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
271 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
272 if [[ -f "$1/$2" ]]; then
273 THEDATE=`date +%Y%m%d%H%M%S`
274 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
275 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
283 skip[apps/workbench_profile]=1
284 # nodemanager_integration tests are not reliable, see #12061.
285 skip[services/nodemanager_integration]=1
292 echo >&2 "$helpmessage"
300 only[$1]=1; skip[$1]=""; shift
309 only_install="$1"; shift
319 repeat=$((${1}+0)); shift
325 suite="${arg%%_test=*}"
327 testargs["$suite"]="$args"
330 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
333 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
339 # R SDK installation is very slow (~360s in a clean environment) and only
340 # required when testing it. Skip that step if it is not needed.
343 if [[ ${#only[@]} -ne 0 ]] &&
344 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
348 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
352 if [[ $NEED_SDK_R == false ]]; then
353 echo "R SDK not needed, it will not be installed."
357 echo 'Starting API, keepproxy, keep-web, ws, arv-git-httpd, and nginx ssl proxy...'
358 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
359 mkdir -p "$WORKSPACE/services/api/log"
361 # Remove empty api.pid file if it exists
362 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
363 rm -f "$WORKSPACE/tmp/api.pid"
366 && eval $(python sdk/python/tests/run_test_server.py start --auth admin || echo fail=1) \
367 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
368 && export ARVADOS_TEST_API_INSTALLED="$$" \
369 && python sdk/python/tests/run_test_server.py start_controller \
370 && python sdk/python/tests/run_test_server.py start_keep_proxy \
371 && python sdk/python/tests/run_test_server.py start_keep-web \
372 && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
373 && python sdk/python/tests/run_test_server.py start_ws \
374 && eval $(python sdk/python/tests/run_test_server.py start_nginx || echo fail=1) \
375 && (env | egrep ^ARVADOS)
376 if [[ -n "$fail" ]]; then
382 if [[ -z "$ARVADOS_TEST_API_HOST" ]]; then
385 unset ARVADOS_TEST_API_HOST
387 && python sdk/python/tests/run_test_server.py stop_nginx \
388 && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
389 && python sdk/python/tests/run_test_server.py stop_ws \
390 && python sdk/python/tests/run_test_server.py stop_keep-web \
391 && python sdk/python/tests/run_test_server.py stop_keep_proxy \
392 && python sdk/python/tests/run_test_server.py stop_controller \
393 && python sdk/python/tests/run_test_server.py stop
397 failures+=("($(basename $0) interrupted)")
404 echo "WORKSPACE=$WORKSPACE"
406 if [[ -z "$CONFIGSRC" ]] && [[ -d "$HOME/arvados-api-server" ]]; then
407 # Jenkins expects us to use this by default.
408 CONFIGSRC="$HOME/arvados-api-server"
411 # Clean up .pyc files that may exist in the workspace
413 find -name '*.pyc' -delete
415 if [[ -z "$temp" ]]; then
419 # Set up temporary install dirs (unless existing dirs were supplied)
420 for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
422 if [[ -z "${!tmpdir}" ]]; then
423 eval "$tmpdir"="$temp/$tmpdir"
425 if ! [[ -d "${!tmpdir}" ]]; then
426 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
430 rm -vf "${WORKSPACE}/tmp/*.log"
432 setup_ruby_environment() {
433 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
434 source "$HOME/.rvm/scripts/rvm"
436 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
437 source "/usr/local/rvm/scripts/rvm"
443 if [[ "$using_rvm" == true ]]; then
444 # If rvm is in use, we can't just put separate "dependencies"
445 # and "gems-under-test" paths to GEM_PATH: passenger resets
446 # the environment to the "current gemset", which would lose
447 # our GEM_PATH and prevent our test suites from running ruby
448 # programs (for example, the Workbench test suite could not
449 # boot an API server or run arv). Instead, we have to make an
450 # rvm gemset and use it for everything.
452 [[ `type rvm | head -n1` == "rvm is a function" ]] \
455 # Put rvm's favorite path back in first place (overriding
456 # virtualenv, which just put itself there). Ignore rvm's
457 # complaint about not being in first place already.
458 rvm use @default 2>/dev/null
460 # Create (if needed) and switch to an @arvados-tests-* gemset,
461 # salting the gemset name so it doesn't interfere with
462 # concurrent builds in other workspaces. Leave the choice of
463 # ruby to the caller.
464 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
465 rvm use "@${gemset}" --create \
466 || fatal 'rvm gemset setup'
470 # When our "bundle install"s need to install new gems to
471 # satisfy dependencies, we want them to go where "gem install
472 # --user-install" would put them. (However, if the caller has
473 # already set GEM_HOME, we assume that's where dependencies
474 # should be installed, and we should leave it alone.)
476 if [ -z "$GEM_HOME" ]; then
477 user_gempath="$(gem env gempath)"
478 export GEM_HOME="${user_gempath%%:*}"
480 PATH="$(gem env gemdir)/bin:$PATH"
482 # When we build and install our own gems, we install them in our
483 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
484 # PATH so integration tests prefer them over other versions that
485 # happen to be installed in $user_gempath, system dirs, etc.
487 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
488 PATH="$tmpdir_gem_home/bin:$PATH"
489 export GEM_PATH="$tmpdir_gem_home"
491 echo "Will install dependencies to $(gem env gemdir)"
492 echo "Will install arvados gems to $tmpdir_gem_home"
493 echo "Gem search path is GEM_PATH=$GEM_PATH"
495 bundle config || gem install bundler \
496 || fatal 'install bundler'
500 if [[ "$using_rvm" == true ]]; then
503 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
507 gem_uninstall_if_exists() {
508 if gem list "$1\$" | egrep '^\w'; then
509 gem uninstall --force --all --executables "$1"
514 local venvdest="$1"; shift
515 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
516 virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
517 elif [[ -n "$short" ]]; then
520 if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
521 # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
522 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
524 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
526 # ubuntu1404 can't seem to install mock via tests_require, but it can do this.
527 "$venvdest/bin/pip" install --no-cache-dir 'mock>=1.0' 'pbr<1.7.0'
530 export PERLINSTALLBASE
531 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
538 mkdir -p "$GOPATH/src/git.curoverse.com"
539 rmdir -v --parents --ignore-fail-on-non-empty "${temp}/GOPATH"
540 if [[ ! -h "$GOPATH/src/git.curoverse.com/arvados.git" ]]; then
542 "$GOPATH/src/git.curoverse.com/arvados.git/tmp/GOPATH" \
543 "$GOPATH/src/git.curoverse.com/arvados.git/tmp" \
544 "$GOPATH/src/git.curoverse.com/arvados.git"; do
545 [[ -d "$d" ]] && rmdir "$d"
549 "$GOPATH/src/git.curoverse.com/arvados.git/arvados" \
550 "$GOPATH/src/git.curoverse.com/arvados.git"; do
551 [[ -h "$d" ]] && rm "$d"
553 ln -vsfT "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git"
554 go get -v github.com/kardianos/govendor
555 cd "$GOPATH/src/git.curoverse.com/arvados.git"
556 if [[ -n "$short" ]]; then
558 "$GOPATH/bin/govendor" sync
560 # Remove cached source dirs in workdir. Otherwise, they will
561 # not qualify as +missing or +external below, and we won't be
562 # able to detect that they're missing from vendor/vendor.json.
565 "$GOPATH/bin/govendor" sync
566 [[ -z $("$GOPATH/bin/govendor" list +unused +missing +external | tee /dev/stderr) ]] \
567 || fatal "vendor/vendor.json has unused or missing dependencies -- try:
569 (export GOPATH=\"${GOPATH}\"; cd \$GOPATH/src/git.curoverse.com/arvados.git && \$GOPATH/bin/govendor add +missing +external && \$GOPATH/bin/govendor remove +unused)
573 ) || fatal "Go setup failed"
575 setup_virtualenv "$VENVDIR" --python python2.7
576 . "$VENVDIR/bin/activate"
578 # Needed for run_test_server.py which is used by certain (non-Python) tests.
579 pip install --no-cache-dir PyYAML \
580 || fatal "pip install PyYAML failed"
582 # Preinstall libcloud if using a fork; otherwise nodemanager "pip
583 # install" won't pick it up by default.
584 if [[ -n "$LIBCLOUD_PIN_SRC" ]]; then
585 pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
586 || pip install --pre --ignore-installed --no-cache-dir "$LIBCLOUD_PIN_SRC" >/dev/null \
587 || fatal "pip install apache-libcloud failed"
590 # Deactivate Python 2 virtualenv
593 declare -a pythonstuff
600 services/dockercleaner:py3
603 tools/crunchstat-summary
606 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
607 # Otherwise, skip dependent tests.
608 PYTHON3=$(which python3)
609 if [[ ${?} = 0 ]]; then
610 setup_virtualenv "$VENV3DIR" --python python3
615 Warning: python3 could not be found. Python 3 tests will be skipped.
620 # Reactivate Python 2 virtualenv
621 . "$VENVDIR/bin/activate"
623 # Note: this must be the last time we change PATH, otherwise rvm will
625 setup_ruby_environment
629 if ! which bundler >/dev/null
631 gem install --user-install bundler || fatal 'Could not install bundler'
634 # Jenkins config requires that glob tmp/*.log match something. Ensure
635 # that happens even if we don't end up running services that set up
637 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
638 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
645 if [[ "$remain" -gt 1 ]]; then
646 remain=$((${remain}-1))
647 title "Repeating ${remain} more times"
651 elif [[ "$retry" == 1 ]]; then
652 read -p 'Try again? [Y/n] ' x
653 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
665 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
668 services/nodemanager | services/nodemanager_integration)
669 suite=services/nodemanager_suite
675 if [[ -z "${skip[$suite]}" && -z "${skip[$1]}" && \
676 (${#only[@]} -eq 0 || ${only[$suite]} -eq 1 || \
677 ${only[$1]} -eq 1) ||
678 ${only[$2]} -eq 1 ]]; then
679 retry do_test_once ${@}
681 title "Skipping ${1} tests"
688 title "Running $1 tests"
690 if [[ "$2" == "go" ]]
692 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
693 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
694 # We do "go get -t" here to catch compilation errors
695 # before trying "go test". Otherwise, coverage-reporting
696 # mode makes Go show the wrong line numbers when reporting
697 # compilation errors.
698 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1" && \
699 cd "$GOPATH/src/git.curoverse.com/arvados.git/$1" && \
700 [[ -z "$(gofmt -e -d . | tee /dev/stderr)" ]] && \
701 if [[ -n "${testargs[$1]}" ]]
703 # "go test -check.vv giturl" doesn't work, but this
705 go test ${short:+-short} ${testargs[$1]}
707 # The above form gets verbose even when testargs is
708 # empty, so use this form in such cases:
709 go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
712 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
714 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
715 rm "$WORKSPACE/tmp/.$covername.tmp"
717 elif [[ "$2" == "pip" ]]
720 cd "$WORKSPACE/$1" && while :
722 tries=$((${tries}+1))
723 # $3 can name a path directory for us to use, including trailing
724 # slash; e.g., the bin/ subdirectory of a virtualenv.
725 "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
727 if [[ ${tries} < 3 && ${result} == 137 ]]
729 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
735 elif [[ "$2" != "" ]]
742 checkexit $result "$1 tests"
743 title "End of $1 tests (`timer`)"
750 if [[ -z "${only_install}" || "${only_install}" == "${1}" || "${only_install}" == "${2}" ]]; then
751 retry do_install_once ${@}
756 if [[ "$skipit" = true ]]; then
757 title "Skipping $1 install"
762 title "Running $1 install"
764 if [[ "$2" == "go" ]]
766 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1"
767 elif [[ "$2" == "pip" ]]
769 # $3 can name a path directory for us to use, including trailing
770 # slash; e.g., the bin/ subdirectory of a virtualenv.
772 # Need to change to a different directory after creating
773 # the source dist package to avoid a pip bug.
774 # see https://arvados.org/issues/5766 for details.
776 # Also need to install twice, because if it believes the package is
777 # already installed, pip it won't install it. So the first "pip
778 # install" ensures that the dependencies are met, the second "pip
779 # install" ensures that we've actually installed the local package
782 && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
784 && "${3}pip" install --no-cache-dir --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
785 && "${3}pip" install --no-cache-dir --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
786 elif [[ "$2" != "" ]]
793 checkexit $result "$1 install"
794 title "End of $1 install (`timer`)"
798 bundle_install_trylocal() {
801 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
802 if ! bundle install --local --no-deployment; then
803 echo "(Running bundle install again, without --local.)"
804 bundle install --no-deployment
811 cd "$WORKSPACE/doc" \
812 && bundle_install_trylocal \
820 with_test_gemset gem_uninstall_if_exists "$gemname" \
821 && cd "$WORKSPACE/$srcpath" \
822 && bundle_install_trylocal \
823 && gem build "$gemname.gemspec" \
824 && with_test_gemset gem install --no-ri --no-rdoc $(ls -t "$gemname"-*.gem|head -n1)
828 install_gem arvados sdk/ruby
830 do_install sdk/ruby ruby_sdk
833 if [[ "$NEED_SDK_R" = true ]]; then
834 cd "$WORKSPACE/sdk/R" \
835 && Rscript --vanilla install_deps.R
838 do_install sdk/R R_sdk
841 cd "$WORKSPACE/sdk/perl" \
842 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
843 && make install INSTALLDIRS=perl
845 do_install sdk/perl perl_sdk
848 install_gem arvados-cli sdk/cli
850 do_install sdk/cli cli
852 install_login-sync() {
853 install_gem arvados-login-sync services/login-sync
855 do_install services/login-sync login-sync
857 # Install the Python SDK early. Various other test suites (like
858 # keepproxy) bring up run_test_server.py, which imports the arvados
859 # module. We can't actually *test* the Python SDK yet though, because
860 # its own test suite brings up some of those other programs (like
862 for p in "${pythonstuff[@]}"
865 if [[ ${dir} = ${p} ]]; then
866 if [[ -z ${skip[python2]} ]]; then
867 do_install ${dir} pip
869 elif [[ -n ${PYTHON3} ]]; then
870 if [[ -z ${skip[python3]} ]]; then
871 do_install ${dir} pip "$VENV3DIR/bin/"
876 install_apiserver() {
877 cd "$WORKSPACE/services/api" \
878 && RAILS_ENV=test bundle_install_trylocal
880 rm -f config/environments/test.rb
881 cp config/environments/test.rb.example config/environments/test.rb
883 if [ -n "$CONFIGSRC" ]
885 for f in database.yml
887 cp "$CONFIGSRC/$f" config/ || fatal "$f"
891 # Clear out any lingering postgresql connections to the test
892 # database, so that we can drop it. This assumes the current user
893 # is a postgresql superuser.
894 cd "$WORKSPACE/services/api" \
895 && test_database=$(python -c "import yaml; print yaml.load(file('config/database.yml'))['test']['database']") \
896 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
898 mkdir -p "$WORKSPACE/services/api/tmp/pids"
900 cert="$WORKSPACE/services/api/tmp/self-signed"
901 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
903 dir="$WORKSPACE/services/api/tmp"
905 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
906 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
910 cd "$WORKSPACE/services/api" \
912 && mkdir -p tmp/git \
914 && tar xf ../../test/test.git.tar \
915 && mkdir -p internal.git \
916 && git --git-dir internal.git init \
919 cd "$WORKSPACE/services/api" \
920 && RAILS_ENV=test bundle exec rake db:drop \
921 && RAILS_ENV=test bundle exec rake db:setup \
922 && RAILS_ENV=test bundle exec rake db:fixtures:load
924 do_install services/api apiserver
936 lib/dispatchcloud/container
937 lib/dispatchcloud/scheduler
938 lib/dispatchcloud/ssh_executor
939 lib/dispatchcloud/worker
951 services/arv-git-httpd
957 services/keep-balance
959 services/crunch-dispatch-local
960 services/crunch-dispatch-slurm
963 tools/keep-block-check
968 for g in "${gostuff[@]}"
973 install_workbench() {
974 cd "$WORKSPACE/apps/workbench" \
975 && mkdir -p tmp/cache \
976 && RAILS_ENV=test bundle_install_trylocal \
977 && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
979 do_install apps/workbench workbench
981 unset http_proxy https_proxy no_proxy
983 test_doclinkchecker() {
987 ARVADOS_API_HOST=qr1hi.arvadosapi.com
988 # Make sure python-epydoc is installed or the next line won't
990 PYTHONPATH=$WORKSPACE/sdk/python/ bundle exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
993 do_test doc doclinkchecker
998 rm -f "$WORKSPACE/services/api/git-commit.version"
999 cd "$WORKSPACE/services/api" \
1000 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test TESTOPTS=-v ${testargs[services/api]}
1002 do_test services/api apiserver
1004 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1005 # because we don't need to start up the api server for subsequent tests.
1006 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1007 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1011 start_services || { stop_services; fatal "start_services"; }
1014 cd "$WORKSPACE/sdk/ruby" \
1015 && bundle exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1017 do_test sdk/ruby ruby_sdk
1020 if [[ "$NEED_SDK_R" = true ]]; then
1021 cd "$WORKSPACE/sdk/R" \
1022 && Rscript --vanilla run_test.R
1029 cd "$WORKSPACE/sdk/cli" \
1030 && mkdir -p /tmp/keep \
1031 && KEEP_LOCAL_STORE=/tmp/keep bundle exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1036 cd "$WORKSPACE/services/login-sync" \
1037 && bundle exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1039 do_test services/login-sync login-sync
1041 test_nodemanager_integration() {
1042 cd "$WORKSPACE/services/nodemanager" \
1043 && tests/integration_test.py ${testargs[services/nodemanager_integration]}
1045 do_test services/nodemanager_integration nodemanager_integration
1047 for p in "${pythonstuff[@]}"
1050 if [[ ${dir} = ${p} ]]; then
1051 if [[ -z ${skip[python2]} ]]; then
1054 elif [[ -n ${PYTHON3} ]]; then
1055 if [[ -z ${skip[python3]} ]]; then
1056 do_test ${dir} pip "$VENV3DIR/bin/"
1061 for g in "${gostuff[@]}"
1066 test_workbench_units() {
1067 cd "$WORKSPACE/apps/workbench" \
1068 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:units TESTOPTS=-v ${testargs[apps/workbench]}
1070 do_test apps/workbench_units workbench_units
1072 test_workbench_functionals() {
1073 cd "$WORKSPACE/apps/workbench" \
1074 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:functionals TESTOPTS=-v ${testargs[apps/workbench]}
1076 do_test apps/workbench_functionals workbench_functionals
1078 test_workbench_integration() {
1079 cd "$WORKSPACE/apps/workbench" \
1080 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:integration TESTOPTS=-v ${testargs[apps/workbench]}
1082 do_test apps/workbench_integration workbench_integration
1085 test_workbench_benchmark() {
1086 cd "$WORKSPACE/apps/workbench" \
1087 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:benchmark ${testargs[apps/workbench_benchmark]}
1089 do_test apps/workbench_benchmark workbench_benchmark
1091 test_workbench_profile() {
1092 cd "$WORKSPACE/apps/workbench" \
1093 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:profile ${testargs[apps/workbench_profile]}
1095 do_test apps/workbench_profile workbench_profile