1 // Copyright (C) The Arvados Authors. All rights reserved.
3 // SPDX-License-Identifier: AGPL-3.0
5 import { ContainerState } from "models/container";
7 describe("Process tests", function () {
12 // Only set up common users once. These aren't set up as aliases because
13 // aliases are cleaned up after every test. Also it doesn't make sense
14 // to set the same users on beforeEach() over and over again, so we
15 // separate a little from Cypress' 'Best Practices' here.
16 cy.getUser("admin", "Admin", "User", true, true)
19 adminUser = this.adminUser;
21 cy.getUser("user", "Active", "User", false, true)
24 activeUser = this.activeUser;
28 beforeEach(function () {
30 cy.clearLocalStorage();
33 function setupDockerImage(image_name) {
34 // Create a collection that will be used as a docker image for the tests.
35 cy.createCollection(adminUser.token, {
38 ". d21353cfe035e3e384563ee55eadbb2f+67108864 5c77a43e329b9838cbec18ff42790e57+55605760 0:122714624:sha256:d8309758b8fe2c81034ffc8a10c36460b77db7bc5e7b448c4e5b684f9d95a678.tar\n",
41 .then(function (dockerImage) {
42 // Give read permissions to the active user on the docker image.
43 cy.createLink(adminUser.token, {
44 link_class: "permission",
46 tail_uuid: activeUser.user.uuid,
47 head_uuid: dockerImage.uuid,
49 .as("dockerImagePermission")
51 // Set-up docker image collection tags
52 cy.createLink(activeUser.token, {
53 link_class: "docker_image_repo+tag",
55 head_uuid: dockerImage.uuid,
56 }).as("dockerImageRepoTag");
57 cy.createLink(activeUser.token, {
58 link_class: "docker_image_hash",
59 name: "sha256:d8309758b8fe2c81034ffc8a10c36460b77db7bc5e7b448c4e5b684f9d95a678",
60 head_uuid: dockerImage.uuid,
61 }).as("dockerImageHash");
64 return cy.getAll("@dockerImage", "@dockerImageRepoTag", "@dockerImageHash", "@dockerImagePermission").then(function ([dockerImage]) {
69 function createContainerRequest(user, name, docker_image, command, reuse = false, state = "Uncommitted") {
70 return setupDockerImage(docker_image).then(function (dockerImage) {
71 return cy.createContainerRequest(user.token, {
74 container_image: dockerImage.portable_data_hash, // for some reason, docker_image doesn't work here
75 output_path: "stdout.txt",
77 runtime_constraints: {
93 describe('Multiselect Toolbar', () => {
94 it('shows the appropriate buttons in the toolbar', () => {
96 const msButtonTooltips = [
100 'Copy and re-run process',
110 createContainerRequest(
112 `test_container_request ${Math.floor(Math.random() * 999999)}`,
114 ["echo", "hello world"],
117 ).then(function (containerRequest) {
118 cy.loginAs(activeUser);
119 cy.goToPath(`/processes/${containerRequest.uuid}`);
120 cy.get("[data-cy=process-details]").should("contain", containerRequest.name);
121 cy.get("[data-cy=process-details-attributes-modifiedby-user]").contains(`Active User (${activeUser.user.uuid})`);
122 cy.get("[data-cy=process-details-attributes-runtime-user]").should("not.exist");
123 cy.get("[data-cy=side-panel-tree]").contains("Home Projects").click();
125 cy.get('[data-cy=data-table-row]').contains(containerRequest.name).should('exist').parent().parent().parent().parent().click()
127 cy.get('[data-cy=multiselect-button]').should('have.length', msButtonTooltips.length)
128 for (let i = 0; i < msButtonTooltips.length; i++) {
129 cy.get('[data-cy=multiselect-button]').eq(i).trigger('mouseover');
130 cy.get('body').contains(msButtonTooltips[i]).should('exist')
131 cy.get('[data-cy=multiselect-button]').eq(i).trigger('mouseout');
137 describe("Details panel", function () {
138 it("shows process details", function () {
139 createContainerRequest(
141 `test_container_request ${Math.floor(Math.random() * 999999)}`,
143 ["echo", "hello world"],
146 ).then(function (containerRequest) {
147 cy.loginAs(activeUser);
148 cy.goToPath(`/processes/${containerRequest.uuid}`);
149 cy.get("[data-cy=process-details]").should("contain", containerRequest.name);
150 cy.get("[data-cy=process-details-attributes-modifiedby-user]").contains(`Active User (${activeUser.user.uuid})`);
151 cy.get("[data-cy=process-details-attributes-runtime-user]").should("not.exist");
154 // Fake submitted by another user
155 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
157 res.body.modified_by_user_uuid = "zzzzz-tpzed-000000000000000";
161 createContainerRequest(
163 `test_container_request ${Math.floor(Math.random() * 999999)}`,
165 ["echo", "hello world"],
168 ).then(function (containerRequest) {
169 cy.loginAs(activeUser);
170 cy.goToPath(`/processes/${containerRequest.uuid}`);
171 cy.get("[data-cy=process-details]").should("contain", containerRequest.name);
172 cy.get("[data-cy=process-details-attributes-modifiedby-user]").contains(`zzzzz-tpzed-000000000000000`);
173 cy.get("[data-cy=process-details-attributes-runtime-user]").contains(`Active User (${activeUser.user.uuid})`);
177 it("should show runtime status indicators", function () {
178 // Setup running container with runtime_status error & warning messages
179 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed")
180 .as("containerRequest")
181 .then(function (containerRequest) {
182 expect(containerRequest.state).to.equal("Committed");
183 expect(containerRequest.container_uuid).not.to.be.equal("");
185 cy.getContainer(activeUser.token, containerRequest.container_uuid).then(function (queuedContainer) {
186 expect(queuedContainer.state).to.be.equal("Queued");
188 cy.updateContainer(adminUser.token, containerRequest.container_uuid, {
190 }).then(function (lockedContainer) {
191 expect(lockedContainer.state).to.be.equal("Locked");
193 cy.updateContainer(adminUser.token, lockedContainer.uuid, {
196 error: "Something went wrong",
197 errorDetail: "Process exited with status 1",
198 warning: "Free disk space is low",
201 .as("runningContainer")
202 .then(function (runningContainer) {
203 expect(runningContainer.state).to.be.equal("Running");
204 expect(runningContainer.runtime_status).to.be.deep.equal({
205 error: "Something went wrong",
206 errorDetail: "Process exited with status 1",
207 warning: "Free disk space is low",
212 // Test that the UI shows the error and warning messages
213 cy.getAll("@containerRequest", "@runningContainer").then(function ([containerRequest]) {
214 cy.loginAs(activeUser);
215 cy.goToPath(`/processes/${containerRequest.uuid}`);
216 cy.get("[data-cy=process-runtime-status-error]")
217 .should("contain", "Something went wrong")
218 .and("contain", "Process exited with status 1");
219 cy.get("[data-cy=process-runtime-status-warning]")
220 .should("contain", "Free disk space is low")
221 .and("contain", "No additional warning details available");
224 // Force container_count for testing
225 let containerCount = 2;
226 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
228 res.body.container_count = containerCount;
232 cy.getAll("@containerRequest").then(function ([containerRequest]) {
233 cy.goToPath(`/processes/${containerRequest.uuid}`);
234 cy.get("[data-cy=process-runtime-status-retry-warning]", { timeout: 7000 }).should("contain", "Process retried 1 time");
237 cy.getAll("@containerRequest").then(function ([containerRequest]) {
239 cy.goToPath(`/processes/${containerRequest.uuid}`);
240 cy.get("[data-cy=process-runtime-status-retry-warning]", { timeout: 7000 }).should("contain", "Process retried 2 times");
244 it("allows copying processes", function () {
245 const crName = "first_container_request";
246 const copiedCrName = "copied_container_request";
247 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
248 cy.loginAs(activeUser);
249 cy.goToPath(`/processes/${containerRequest.uuid}`);
250 cy.get("[data-cy=process-details]").should("contain", crName);
252 cy.get("[data-cy=process-details]").find('button[title="More options"]').click();
253 cy.get("ul[data-cy=context-menu]").contains("Copy and re-run process").click();
256 cy.get("[data-cy=form-dialog]").within(() => {
257 cy.get("input[name=name]").clear().type(copiedCrName);
258 cy.get("[data-cy=projects-tree-home-tree-picker]").click();
259 cy.get("[data-cy=form-submit-btn]").click();
262 cy.get("[data-cy=process-details]").should("contain", copiedCrName);
263 cy.get("[data-cy=process-details]").find("button").contains("Run");
266 const getFakeContainer = fakeContainerUuid => ({
267 href: `/containers/${fakeContainerUuid}`,
268 kind: "arvados#container",
269 etag: "ecfosljpnxfari9a8m7e4yv06",
270 uuid: fakeContainerUuid,
271 owner_uuid: "zzzzz-tpzed-000000000000000",
272 created_at: "2023-02-13T15:55:47.308915000Z",
273 modified_by_client_uuid: "zzzzz-ozdt8-q6dzdi1lcc03155",
274 modified_by_user_uuid: "zzzzz-tpzed-000000000000000",
275 modified_at: "2023-02-15T19:12:45.987086000Z",
277 "arvados-cwl-runner",
280 "--project-uuid=zzzzz-j7d0g-yr18k784zplfeza",
281 "/var/lib/cwl/workflow.json#main",
282 "/var/lib/cwl/cwl.input.json",
284 container_image: "4ad7d11381df349e464694762db14e04+303",
285 cwd: "/var/spool/cwl",
289 locked_by_uuid: null,
292 output_path: "/var/spool/cwl",
294 runtime_constraints: {
299 hardware_capability: "",
301 keep_cache_disk: 2147483648,
309 scheduling_parameters: {
314 runtime_user_uuid: "zzzzz-tpzed-vllbpebicy84rd5",
315 runtime_auth_scopes: ["all"],
317 gateway_address: null,
318 interactive_session_started: false,
319 output_storage_classes: ["default"],
320 output_properties: {},
322 subrequests_cost: 0.0,
325 it("shows cancel button when appropriate", function () {
326 // Ignore collection requests
328 { method: "GET", url: `**/arvados/v1/collections/*` },
335 // Uncommitted container
336 const crUncommitted = `Test process ${Math.floor(Math.random() * 999999)}`;
337 createContainerRequest(activeUser, crUncommitted, "arvados/jobs", ["echo", "hello world"], false, "Uncommitted").then(function (
340 // Navigate to process and verify run / cancel button
341 cy.goToPath(`/processes/${containerRequest.uuid}`);
343 cy.get("[data-cy=process-details]").should("contain", crUncommitted);
344 cy.get("[data-cy=process-run-button]").should("exist");
345 cy.get("[data-cy=process-cancel-button]").should("not.exist");
349 const crQueued = `Test process ${Math.floor(Math.random() * 999999)}`;
350 const fakeCrUuid = "zzzzz-dz642-000000000000001";
351 createContainerRequest(activeUser, crQueued, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
354 // Fake container uuid
355 cy.intercept({ method: "GET", url: `**/arvados/v1/container_requests/${containerRequest.uuid}` }, req => {
357 res.body.output_uuid = fakeCrUuid;
358 res.body.priority = 500;
359 res.body.state = "Committed";
364 const container = getFakeContainer(fakeCrUuid);
366 { method: "GET", url: `**/arvados/v1/container/${fakeCrUuid}` },
369 body: { ...container, state: "Queued", priority: 500 },
373 // Navigate to process and verify cancel button
374 cy.goToPath(`/processes/${containerRequest.uuid}`);
376 cy.get("[data-cy=process-details]").should("contain", crQueued);
377 cy.get("[data-cy=process-cancel-button]").contains("Cancel");
381 const crLocked = `Test process ${Math.floor(Math.random() * 999999)}`;
382 const fakeCrLockedUuid = "zzzzz-dz642-000000000000002";
383 createContainerRequest(activeUser, crLocked, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
386 // Fake container uuid
387 cy.intercept({ method: "GET", url: `**/arvados/v1/container_requests/${containerRequest.uuid}` }, req => {
389 res.body.output_uuid = fakeCrLockedUuid;
390 res.body.priority = 500;
391 res.body.state = "Committed";
396 const container = getFakeContainer(fakeCrLockedUuid);
398 { method: "GET", url: `**/arvados/v1/container/${fakeCrLockedUuid}` },
401 body: { ...container, state: "Locked", priority: 500 },
405 // Navigate to process and verify cancel button
406 cy.goToPath(`/processes/${containerRequest.uuid}`);
408 cy.get("[data-cy=process-details]").should("contain", crLocked);
409 cy.get("[data-cy=process-cancel-button]").contains("Cancel");
413 const crOnHold = `Test process ${Math.floor(Math.random() * 999999)}`;
414 const fakeCrOnHoldUuid = "zzzzz-dz642-000000000000003";
415 createContainerRequest(activeUser, crOnHold, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
418 // Fake container uuid
419 cy.intercept({ method: "GET", url: `**/arvados/v1/container_requests/${containerRequest.uuid}` }, req => {
421 res.body.output_uuid = fakeCrOnHoldUuid;
422 res.body.priority = 0;
423 res.body.state = "Committed";
428 const container = getFakeContainer(fakeCrOnHoldUuid);
430 { method: "GET", url: `**/arvados/v1/container/${fakeCrOnHoldUuid}` },
433 body: { ...container, state: "Queued", priority: 0 },
437 // Navigate to process and verify cancel button
438 cy.goToPath(`/processes/${containerRequest.uuid}`);
440 cy.get("[data-cy=process-details]").should("contain", crOnHold);
441 cy.get("[data-cy=process-run-button]").should("exist");
442 cy.get("[data-cy=process-cancel-button]").should("not.exist");
447 describe("Logs panel", function () {
448 it("shows live process logs", function () {
449 cy.intercept({ method: "GET", url: "**/arvados/v1/containers/*" }, req => {
451 res.body.state = ContainerState.RUNNING;
455 const crName = "test_container_request";
456 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
457 // Create empty log file before loading process page
458 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [""]);
460 cy.loginAs(activeUser);
461 cy.goToPath(`/processes/${containerRequest.uuid}`);
462 cy.get("[data-cy=process-details]").should("contain", crName);
463 cy.get("[data-cy=process-logs]").should("contain", "No logs yet").and("not.contain", "hello world");
466 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", ["2023-07-18T20:14:48.128642814Z hello world"]).then(() => {
467 cy.get("[data-cy=process-logs]", { timeout: 7000 }).should("not.contain", "No logs yet").and("contain", "hello world");
470 // Append new log line to different file
471 cy.appendLog(adminUser.token, containerRequest.uuid, "stderr.txt", ["2023-07-18T20:14:49.128642814Z hello new line"]).then(() => {
472 cy.get("[data-cy=process-logs]", { timeout: 7000 }).should("not.contain", "No logs yet").and("contain", "hello new line");
477 it("filters process logs by event type", function () {
478 const nodeInfoLogs = [
480 "Linux compute-99cb150b26149780de44b929577e1aed-19rgca8vobuvc4p 5.4.0-1059-azure #62~18.04.1-Ubuntu SMP Tue Sep 14 17:53:18 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux",
483 "vendor_id : GenuineIntel",
486 "model name : Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz",
488 const crunchRunLogs = [
489 "2022-03-22T13:56:22.542417997Z using local keepstore process (pid 3733) at http://localhost:46837, writing logs to keepstore.txt in log collection",
490 "2022-03-22T13:56:26.237571754Z crunch-run 2.4.0~dev20220321141729 (go1.17.1) started",
491 "2022-03-22T13:56:26.244704134Z crunch-run process has uid=0(root) gid=0(root) groups=0(root)",
492 "2022-03-22T13:56:26.244862836Z Executing container 'zzzzz-dz642-1wokwvcct9s9du3' using docker runtime",
493 "2022-03-22T13:56:26.245037738Z Executing on host 'compute-99cb150b26149780de44b929577e1aed-19rgca8vobuvc4p'",
496 "2022-03-22T13:56:22.542417987Z Lorem ipsum dolor sit amet, consectetur adipiscing elit. Donec dui nisi, hendrerit porta sapien a, pretium dignissim purus.",
497 "2022-03-22T13:56:22.542417997Z Integer viverra, mauris finibus aliquet ultricies, dui mauris cursus justo, ut venenatis nibh ex eget neque.",
498 "2022-03-22T13:56:22.542418007Z In hac habitasse platea dictumst.",
499 "2022-03-22T13:56:22.542418027Z Fusce fringilla turpis id accumsan faucibus. Donec congue congue ex non posuere. In semper mi quis tristique rhoncus.",
500 "2022-03-22T13:56:22.542418037Z Interdum et malesuada fames ac ante ipsum primis in faucibus.",
501 "2022-03-22T13:56:22.542418047Z Quisque fermentum tortor ex, ut suscipit velit feugiat faucibus.",
502 "2022-03-22T13:56:22.542418057Z Donec vitae porta risus, at luctus nulla. Mauris gravida iaculis ipsum, id sagittis tortor egestas ac.",
503 "2022-03-22T13:56:22.542418067Z Maecenas condimentum volutpat nulla. Integer lacinia maximus risus eu posuere.",
504 "2022-03-22T13:56:22.542418077Z Donec vitae leo id augue gravida bibendum.",
505 "2022-03-22T13:56:22.542418087Z Nam libero libero, pretium ac faucibus elementum, mattis nec ex.",
506 "2022-03-22T13:56:22.542418097Z Nullam id laoreet nibh. Vivamus tellus metus, pretium quis justo ut, bibendum varius metus. Pellentesque vitae accumsan lorem, quis tincidunt augue.",
507 "2022-03-22T13:56:22.542418107Z Aliquam viverra nisi nulla, et efficitur dolor mattis in.",
508 "2022-03-22T13:56:22.542418117Z Sed at enim sit amet nulla tincidunt mattis. Aenean eget aliquet ex, non ultrices ex. Nulla ex tortor, vestibulum aliquam tempor ac, aliquam vel est.",
509 "2022-03-22T13:56:22.542418127Z Fusce auctor faucibus libero id venenatis. Etiam sodales, odio eu cursus efficitur, quam sem blandit ex, quis porttitor enim dui quis lectus. In id tincidunt felis.",
510 "2022-03-22T13:56:22.542418137Z Phasellus non ex quis arcu tempus faucibus molestie in sapien.",
511 "2022-03-22T13:56:22.542418147Z Duis tristique semper dolor, vitae pulvinar risus.",
512 "2022-03-22T13:56:22.542418157Z Aliquam tortor elit, luctus nec tortor eget, porta tristique nulla.",
513 "2022-03-22T13:56:22.542418167Z Nulla eget mollis ipsum.",
516 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (
519 cy.appendLog(adminUser.token, containerRequest.uuid, "node-info.txt", nodeInfoLogs).as("nodeInfoLogs");
520 cy.appendLog(adminUser.token, containerRequest.uuid, "crunch-run.txt", crunchRunLogs).as("crunchRunLogs");
521 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", stdoutLogs).as("stdoutLogs");
523 cy.getAll("@stdoutLogs", "@nodeInfoLogs", "@crunchRunLogs").then(function () {
524 cy.loginAs(activeUser);
525 cy.goToPath(`/processes/${containerRequest.uuid}`);
526 // Should show main logs by default
527 cy.get("[data-cy=process-logs-filter]", { timeout: 7000 }).should("contain", "Main logs");
528 cy.get("[data-cy=process-logs]")
529 .should("contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
530 .and("not.contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
531 .and("contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
533 cy.get("[data-cy=process-logs-filter]").click();
534 cy.get("body").contains("li", "All logs").click();
535 cy.get("[data-cy=process-logs]")
536 .should("contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
537 .and("contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
538 .and("contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
539 // Select 'node-info' logs
540 cy.get("[data-cy=process-logs-filter]").click();
541 cy.get("body").contains("li", "node-info").click();
542 cy.get("[data-cy=process-logs]")
543 .should("not.contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
544 .and("contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
545 .and("not.contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
546 // Select 'stdout' logs
547 cy.get("[data-cy=process-logs-filter]").click();
548 cy.get("body").contains("li", "stdout").click();
549 cy.get("[data-cy=process-logs]")
550 .should("contain", stdoutLogs[Math.floor(Math.random() * stdoutLogs.length)])
551 .and("not.contain", nodeInfoLogs[Math.floor(Math.random() * nodeInfoLogs.length)])
552 .and("not.contain", crunchRunLogs[Math.floor(Math.random() * crunchRunLogs.length)]);
557 it("sorts combined logs", function () {
558 const crName = "test_container_request";
559 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
560 cy.appendLog(adminUser.token, containerRequest.uuid, "node-info.txt", [
568 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [
569 "2023-07-18T20:14:48.128642814Z first",
570 "2023-07-18T20:14:49.128642814Z third",
573 cy.appendLog(adminUser.token, containerRequest.uuid, "stderr.txt", ["2023-07-18T20:14:48.528642814Z second"]).as("stderr");
575 cy.loginAs(activeUser);
576 cy.goToPath(`/processes/${containerRequest.uuid}`);
577 cy.get("[data-cy=process-details]").should("contain", crName);
578 cy.get("[data-cy=process-logs]").should("contain", "No logs yet");
580 cy.getAll("@node-info", "@stdout", "@stderr").then(() => {
581 // Verify sorted main logs
582 cy.get("[data-cy=process-logs] pre", { timeout: 7000 }).eq(0).should("contain", "2023-07-18T20:14:48.128642814Z first");
583 cy.get("[data-cy=process-logs] pre").eq(1).should("contain", "2023-07-18T20:14:48.528642814Z second");
584 cy.get("[data-cy=process-logs] pre").eq(2).should("contain", "2023-07-18T20:14:49.128642814Z third");
586 // Switch to All logs
587 cy.get("[data-cy=process-logs-filter]").click();
588 cy.get("body").contains("li", "All logs").click();
589 // Verify non-sorted lines were preserved
590 cy.get("[data-cy=process-logs] pre").eq(0).should("contain", "3: nodeinfo 1");
591 cy.get("[data-cy=process-logs] pre").eq(1).should("contain", "2: nodeinfo 2");
592 cy.get("[data-cy=process-logs] pre").eq(2).should("contain", "1: nodeinfo 3");
593 cy.get("[data-cy=process-logs] pre").eq(3).should("contain", "2: nodeinfo 4");
594 cy.get("[data-cy=process-logs] pre").eq(4).should("contain", "3: nodeinfo 5");
595 // Verify sorted logs
596 cy.get("[data-cy=process-logs] pre").eq(5).should("contain", "2023-07-18T20:14:48.128642814Z first");
597 cy.get("[data-cy=process-logs] pre").eq(6).should("contain", "2023-07-18T20:14:48.528642814Z second");
598 cy.get("[data-cy=process-logs] pre").eq(7).should("contain", "2023-07-18T20:14:49.128642814Z third");
603 it("preserves original ordering of lines within the same log type", function () {
604 const crName = "test_container_request";
605 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
606 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [
608 "2023-07-18T20:14:46.000000000Z A out 1",
609 // Comes fourth in a contiguous block
610 "2023-07-18T20:14:48.128642814Z A out 2",
611 "2023-07-18T20:14:48.128642814Z X out 3",
612 "2023-07-18T20:14:48.128642814Z A out 4",
615 cy.appendLog(adminUser.token, containerRequest.uuid, "stderr.txt", [
617 "2023-07-18T20:14:47.000000000Z Z err 1",
618 // Comes third in a contiguous block
619 "2023-07-18T20:14:48.128642814Z B err 2",
620 "2023-07-18T20:14:48.128642814Z C err 3",
621 "2023-07-18T20:14:48.128642814Z Y err 4",
622 "2023-07-18T20:14:48.128642814Z Z err 5",
623 "2023-07-18T20:14:48.128642814Z A err 6",
626 cy.loginAs(activeUser);
627 cy.goToPath(`/processes/${containerRequest.uuid}`);
628 cy.get("[data-cy=process-details]").should("contain", crName);
629 cy.get("[data-cy=process-logs]").should("contain", "No logs yet");
631 cy.getAll("@stdout", "@stderr").then(() => {
632 // Switch to All logs
633 cy.get("[data-cy=process-logs-filter]").click();
634 cy.get("body").contains("li", "All logs").click();
635 // Verify sorted logs
636 cy.get("[data-cy=process-logs] pre").eq(0).should("contain", "2023-07-18T20:14:46.000000000Z A out 1");
637 cy.get("[data-cy=process-logs] pre").eq(1).should("contain", "2023-07-18T20:14:47.000000000Z Z err 1");
638 cy.get("[data-cy=process-logs] pre").eq(2).should("contain", "2023-07-18T20:14:48.128642814Z B err 2");
639 cy.get("[data-cy=process-logs] pre").eq(3).should("contain", "2023-07-18T20:14:48.128642814Z C err 3");
640 cy.get("[data-cy=process-logs] pre").eq(4).should("contain", "2023-07-18T20:14:48.128642814Z Y err 4");
641 cy.get("[data-cy=process-logs] pre").eq(5).should("contain", "2023-07-18T20:14:48.128642814Z Z err 5");
642 cy.get("[data-cy=process-logs] pre").eq(6).should("contain", "2023-07-18T20:14:48.128642814Z A err 6");
643 cy.get("[data-cy=process-logs] pre").eq(7).should("contain", "2023-07-18T20:14:48.128642814Z A out 2");
644 cy.get("[data-cy=process-logs] pre").eq(8).should("contain", "2023-07-18T20:14:48.128642814Z X out 3");
645 cy.get("[data-cy=process-logs] pre").eq(9).should("contain", "2023-07-18T20:14:48.128642814Z A out 4");
650 it("correctly generates sniplines", function () {
651 const SNIPLINE = `================ ✀ ================ ✀ ========= Some log(s) were skipped ========= ✀ ================ ✀ ================`;
652 const crName = "test_container_request";
653 createContainerRequest(activeUser, crName, "arvados/jobs", ["echo", "hello world"], false, "Committed").then(function (containerRequest) {
654 cy.appendLog(adminUser.token, containerRequest.uuid, "stdout.txt", [
655 "X".repeat(63999) + "_" + "O".repeat(100) + "_" + "X".repeat(63999),
658 cy.loginAs(activeUser);
659 cy.goToPath(`/processes/${containerRequest.uuid}`);
660 cy.get("[data-cy=process-details]").should("contain", crName);
661 cy.get("[data-cy=process-logs]").should("contain", "No logs yet");
663 // Switch to stdout since lines are unsortable (no timestamp)
664 cy.get("[data-cy=process-logs-filter]").click();
665 cy.get("body").contains("li", "stdout").click();
667 cy.getAll("@stdout").then(() => {
668 // Verify first 64KB and snipline
669 cy.get("[data-cy=process-logs] pre", { timeout: 7000 })
671 .should("contain", "X".repeat(63999) + "_\n" + SNIPLINE);
673 cy.get("[data-cy=process-logs] pre")
675 .should("contain", "_" + "X".repeat(63999));
676 // Verify none of the Os got through
677 cy.get("[data-cy=process-logs] pre").should("not.contain", "O");
683 describe("I/O panel", function () {
687 id: "#main/input_file",
688 label: "Label Description",
693 basename: "input1.tar",
695 location: "keep:00000000000000000000000000000000+01/input1.tar",
698 basename: "input1-2.txt",
700 location: "keep:00000000000000000000000000000000+01/input1-2.txt",
703 basename: "input1-3.txt",
705 location: "keep:00000000000000000000000000000000+01/input1-3.txt",
708 basename: "input1-4.txt",
710 location: "keep:00000000000000000000000000000000+01/input1-4.txt",
718 id: "#main/input_dir",
719 doc: "Doc Description",
724 basename: "11111111111111111111111111111111+01",
726 location: "keep:11111111111111111111111111111111+01",
732 id: "#main/input_bool",
733 doc: ["Doc desc 1", "Doc desc 2"],
742 id: "#main/input_int",
751 id: "#main/input_long",
760 id: "#main/input_float",
769 id: "#main/input_double",
778 id: "#main/input_string",
782 input_string: "Hello World",
787 id: "#main/input_file_array",
796 basename: "input2.tar",
798 location: "keep:00000000000000000000000000000000+02/input2.tar",
801 basename: "input3.tar",
803 location: "keep:00000000000000000000000000000000+03/input3.tar",
806 basename: "input3-2.txt",
808 location: "keep:00000000000000000000000000000000+03/input3-2.txt",
813 $import: "import_path",
820 id: "#main/input_dir_array",
829 basename: "11111111111111111111111111111111+02",
831 location: "keep:11111111111111111111111111111111+02",
834 basename: "11111111111111111111111111111111+03",
836 location: "keep:11111111111111111111111111111111+03",
839 $import: "import_path",
846 id: "#main/input_int_array",
858 $import: "import_path",
865 id: "#main/input_long_array",
876 $import: "import_path",
883 id: "#main/input_float_array",
895 $import: "import_path",
902 id: "#main/input_double_array",
909 input_double_array: [
914 $import: "import_path",
921 id: "#main/input_string_array",
928 input_string_array: [
933 $import: "import_path",
940 id: "#main/input_bool_include",
944 input_bool_include: {
945 $include: "include_path",
951 id: "#main/input_int_include",
956 $include: "include_path",
962 id: "#main/input_float_include",
966 input_float_include: {
967 $include: "include_path",
973 id: "#main/input_string_include",
977 input_string_include: {
978 $include: "include_path",
984 id: "#main/input_file_include",
988 input_file_include: {
989 $include: "include_path",
995 id: "#main/input_directory_include",
999 input_directory_include: {
1000 $include: "include_path",
1006 id: "#main/input_file_url",
1011 basename: "index.html",
1013 location: "http://example.com/index.html",
1019 const testOutputs = [
1022 id: "#main/output_file",
1023 label: "Label Description",
1028 basename: "cat.png",
1030 location: "cat.png",
1036 id: "#main/output_file_with_secondary",
1037 doc: "Doc Description",
1041 output_file_with_secondary: {
1042 basename: "main.dat",
1044 location: "main.dat",
1047 basename: "secondary.dat",
1049 location: "secondary.dat",
1052 basename: "secondary2.dat",
1054 location: "secondary2.dat",
1062 id: "#main/output_dir",
1063 doc: ["Doc desc 1", "Doc desc 2"],
1068 basename: "outdir1",
1070 location: "outdir1",
1076 id: "#main/output_bool",
1085 id: "#main/output_int",
1094 id: "#main/output_long",
1103 id: "#main/output_float",
1107 output_float: 100.5,
1112 id: "#main/output_double",
1116 output_double: 100.3,
1121 id: "#main/output_string",
1125 output_string: "Hello output",
1130 id: "#main/output_file_array",
1137 output_file_array: [
1139 basename: "output2.tar",
1141 location: "output2.tar",
1144 basename: "output3.tar",
1146 location: "output3.tar",
1153 id: "#main/output_dir_array",
1162 basename: "outdir2",
1164 location: "outdir2",
1167 basename: "outdir3",
1169 location: "outdir3",
1176 id: "#main/output_int_array",
1183 output_int_array: [10, 11, 12],
1188 id: "#main/output_long_array",
1195 output_long_array: [51, 52],
1200 id: "#main/output_float_array",
1207 output_float_array: [100.2, 100.4, 100.6],
1212 id: "#main/output_double_array",
1219 output_double_array: [100.1, 100.2, 100.3],
1224 id: "#main/output_string_array",
1231 output_string_array: ["Hello", "Output", "!"],
1236 const verifyIOParameter = (name, label, doc, val, collection, multipleRows) => {
1240 .within($mainRow => {
1241 label && cy.contains(label);
1244 cy.get($mainRow).nextUntil('[data-cy="process-io-param"]').as("secondaryRows");
1246 if (Array.isArray(val)) {
1247 val.forEach(v => cy.get("@secondaryRows").contains(v));
1249 cy.get("@secondaryRows").contains(val);
1253 cy.get("@secondaryRows").contains(collection);
1257 if (Array.isArray(val)) {
1258 val.forEach(v => cy.contains(v));
1264 cy.contains(collection);
1270 const verifyIOParameterImage = (name, url) => {
1275 cy.get('[alt="Inline Preview"]')
1276 .should("be.visible")
1278 expect($img[0].naturalWidth).to.be.greaterThan(0);
1279 expect($img[0].src).contains(url);
1284 it("displays IO parameters with keep links and previews", function () {
1285 // Create output collection for real files
1286 cy.createCollection(adminUser.token, {
1287 name: `Test collection ${Math.floor(Math.random() * 999999)}`,
1288 owner_uuid: activeUser.user.uuid,
1289 }).then(testOutputCollection => {
1290 cy.loginAs(activeUser);
1292 cy.goToPath(`/collections/${testOutputCollection.uuid}`);
1294 cy.get("[data-cy=upload-button]").click();
1296 cy.fixture("files/cat.png", "base64").then(content => {
1297 cy.get("[data-cy=drag-and-drop]").upload(content, "cat.png");
1298 cy.get("[data-cy=form-submit-btn]").click();
1299 cy.waitForDom().get("[data-cy=form-submit-btn]").should("not.exist");
1300 // Confirm final collection state.
1301 cy.get("[data-cy=collection-files-panel]").contains("cat.png").should("exist");
1304 cy.getCollection(activeUser.token, testOutputCollection.uuid).as("testOutputCollection");
1307 // Get updated collection pdh
1308 cy.getAll("@testOutputCollection").then(([testOutputCollection]) => {
1309 // Add output uuid and inputs to container request
1310 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
1312 res.body.output_uuid = testOutputCollection.uuid;
1313 res.body.mounts["/var/lib/cwl/cwl.input.json"] = {
1314 content: testInputs.map(param => param.input).reduce((acc, val) => Object.assign(acc, val), {}),
1316 res.body.mounts["/var/lib/cwl/workflow.json"] = {
1321 inputs: testInputs.map(input => input.definition),
1322 outputs: testOutputs.map(output => output.definition),
1330 // Stub fake output collection
1332 { method: "GET", url: `**/arvados/v1/collections/${testOutputCollection.uuid}*` },
1336 uuid: testOutputCollection.uuid,
1337 portable_data_hash: testOutputCollection.portable_data_hash,
1342 // Stub fake output json
1344 { method: "GET", url: "**/c%3Dzzzzz-4zz18-zzzzzzzzzzzzzzz/cwl.output.json" },
1347 body: testOutputs.map(param => param.output).reduce((acc, val) => Object.assign(acc, val), {}),
1351 // Stub webdav response, points to output json
1353 { method: "PROPFIND", url: "*" },
1355 fixture: "webdav-propfind-outputs.xml",
1360 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed").as(
1364 cy.getAll("@containerRequest", "@testOutputCollection").then(function ([containerRequest, testOutputCollection]) {
1365 cy.goToPath(`/processes/${containerRequest.uuid}`);
1366 cy.get("[data-cy=process-io-card] h6")
1368 .parents("[data-cy=process-io-card]")
1370 verifyIOParameter("input_file", null, "Label Description", "input1.tar", "00000000000000000000000000000000+01");
1371 verifyIOParameter("input_file", null, "Label Description", "input1-2.txt", undefined, true);
1372 verifyIOParameter("input_file", null, "Label Description", "input1-3.txt", undefined, true);
1373 verifyIOParameter("input_file", null, "Label Description", "input1-4.txt", undefined, true);
1374 verifyIOParameter("input_dir", null, "Doc Description", "/", "11111111111111111111111111111111+01");
1375 verifyIOParameter("input_bool", null, "Doc desc 1, Doc desc 2", "true");
1376 verifyIOParameter("input_int", null, null, "1");
1377 verifyIOParameter("input_long", null, null, "1");
1378 verifyIOParameter("input_float", null, null, "1.5");
1379 verifyIOParameter("input_double", null, null, "1.3");
1380 verifyIOParameter("input_string", null, null, "Hello World");
1381 verifyIOParameter("input_file_array", null, null, "input2.tar", "00000000000000000000000000000000+02");
1382 verifyIOParameter("input_file_array", null, null, "input3.tar", undefined, true);
1383 verifyIOParameter("input_file_array", null, null, "input3-2.txt", undefined, true);
1384 verifyIOParameter("input_file_array", null, null, "Cannot display value", undefined, true);
1385 verifyIOParameter("input_dir_array", null, null, "/", "11111111111111111111111111111111+02");
1386 verifyIOParameter("input_dir_array", null, null, "/", "11111111111111111111111111111111+03", true);
1387 verifyIOParameter("input_dir_array", null, null, "Cannot display value", undefined, true);
1388 verifyIOParameter("input_int_array", null, null, ["1", "3", "5", "Cannot display value"]);
1389 verifyIOParameter("input_long_array", null, null, ["10", "20", "Cannot display value"]);
1390 verifyIOParameter("input_float_array", null, null, ["10.2", "10.4", "10.6", "Cannot display value"]);
1391 verifyIOParameter("input_double_array", null, null, ["20.1", "20.2", "20.3", "Cannot display value"]);
1392 verifyIOParameter("input_string_array", null, null, ["Hello", "World", "!", "Cannot display value"]);
1393 verifyIOParameter("input_bool_include", null, null, "Cannot display value");
1394 verifyIOParameter("input_int_include", null, null, "Cannot display value");
1395 verifyIOParameter("input_float_include", null, null, "Cannot display value");
1396 verifyIOParameter("input_string_include", null, null, "Cannot display value");
1397 verifyIOParameter("input_file_include", null, null, "Cannot display value");
1398 verifyIOParameter("input_directory_include", null, null, "Cannot display value");
1399 verifyIOParameter("input_file_url", null, null, "http://example.com/index.html");
1401 cy.get("[data-cy=process-io-card] h6")
1402 .contains("Outputs")
1403 .parents("[data-cy=process-io-card]")
1405 cy.get(ctx).scrollIntoView();
1406 cy.get('[data-cy="io-preview-image-toggle"]').click({ waitForAnimations: false });
1407 const outPdh = testOutputCollection.portable_data_hash;
1409 verifyIOParameter("output_file", null, "Label Description", "cat.png", `${outPdh}`);
1410 verifyIOParameterImage("output_file", `/c=${outPdh}/cat.png`);
1411 verifyIOParameter("output_file_with_secondary", null, "Doc Description", "main.dat", `${outPdh}`);
1412 verifyIOParameter("output_file_with_secondary", null, "Doc Description", "secondary.dat", undefined, true);
1413 verifyIOParameter("output_file_with_secondary", null, "Doc Description", "secondary2.dat", undefined, true);
1414 verifyIOParameter("output_dir", null, "Doc desc 1, Doc desc 2", "outdir1", `${outPdh}`);
1415 verifyIOParameter("output_bool", null, null, "true");
1416 verifyIOParameter("output_int", null, null, "1");
1417 verifyIOParameter("output_long", null, null, "1");
1418 verifyIOParameter("output_float", null, null, "100.5");
1419 verifyIOParameter("output_double", null, null, "100.3");
1420 verifyIOParameter("output_string", null, null, "Hello output");
1421 verifyIOParameter("output_file_array", null, null, "output2.tar", `${outPdh}`);
1422 verifyIOParameter("output_file_array", null, null, "output3.tar", undefined, true);
1423 verifyIOParameter("output_dir_array", null, null, "outdir2", `${outPdh}`);
1424 verifyIOParameter("output_dir_array", null, null, "outdir3", undefined, true);
1425 verifyIOParameter("output_int_array", null, null, ["10", "11", "12"]);
1426 verifyIOParameter("output_long_array", null, null, ["51", "52"]);
1427 verifyIOParameter("output_float_array", null, null, ["100.2", "100.4", "100.6"]);
1428 verifyIOParameter("output_double_array", null, null, ["100.1", "100.2", "100.3"]);
1429 verifyIOParameter("output_string_array", null, null, ["Hello", "Output", "!"]);
1434 it("displays IO parameters with no value", function () {
1435 const fakeOutputUUID = "zzzzz-4zz18-abcdefghijklmno";
1436 const fakeOutputPDH = "11111111111111111111111111111111+99/";
1438 cy.loginAs(activeUser);
1440 // Add output uuid and inputs to container request
1441 cy.intercept({ method: "GET", url: "**/arvados/v1/container_requests/*" }, req => {
1443 res.body.output_uuid = fakeOutputUUID;
1444 res.body.mounts["/var/lib/cwl/cwl.input.json"] = {
1447 res.body.mounts["/var/lib/cwl/workflow.json"] = {
1452 inputs: testInputs.map(input => input.definition),
1453 outputs: testOutputs.map(output => output.definition),
1461 // Stub fake output collection
1463 { method: "GET", url: `**/arvados/v1/collections/${fakeOutputUUID}*` },
1467 uuid: fakeOutputUUID,
1468 portable_data_hash: fakeOutputPDH,
1473 // Stub fake output json
1475 { method: "GET", url: `**/c%3D${fakeOutputUUID}/cwl.output.json` },
1482 cy.readFile("cypress/fixtures/webdav-propfind-outputs.xml").then(data => {
1483 // Stub webdav response, points to output json
1485 { method: "PROPFIND", url: "*" },
1488 body: data.replace(/zzzzz-4zz18-zzzzzzzzzzzzzzz/g, fakeOutputUUID),
1493 createContainerRequest(activeUser, "test_container_request", "arvados/jobs", ["echo", "hello world"], false, "Committed").as(
1497 cy.getAll("@containerRequest").then(function ([containerRequest]) {
1498 cy.goToPath(`/processes/${containerRequest.uuid}`);
1501 cy.get("[data-cy=process-io-card] h6")
1503 .parents("[data-cy=process-io-card]")
1507 cy.get("tbody tr").each(item => {
1508 cy.wrap(item).contains("No value");
1511 cy.get("[data-cy=process-io-card] h6")
1512 .contains("Outputs")
1513 .parents("[data-cy=process-io-card]")
1515 cy.get("tbody tr").each(item => {
1516 cy.wrap(item).contains("No value");