cypress/integration/workflow.spec.js

   1 // Copyright (C) The Arvados Authors. All rights reserved.
   2 //
   3 // SPDX-License-Identifier: AGPL-3.0
   4
   5 describe('Registered workflow panel tests', function() {
   6     let activeUser;
   7     let adminUser;
   8
   9     before(function() {
  10         // Only set up common users once. These aren't set up as aliases because
  11         // aliases are cleaned up after every test. Also it doesn't make sense
  12         // to set the same users on beforeEach() over and over again, so we
  13         // separate a little from Cypress' 'Best Practices' here.
  14         cy.getUser('admin', 'Admin', 'User', true, true)
  15             .as('adminUser').then(function() {
  16                 adminUser = this.adminUser;
  17             }
  18         );
  19         cy.getUser('user', 'Active', 'User', false, true)
  20             .as('activeUser').then(function() {
  21                 activeUser = this.activeUser;
  22             }
  23         );
  24     });
  25
  26     it('should handle null definition', function() {
  27         cy.createResource(activeUser.token, "workflows", {workflow: {name: "Test wf"}})
  28             .then(function(workflowResource) {
  29                 cy.loginAs(activeUser);
  30                 cy.goToPath(`/workflows/${workflowResource.uuid}`);
  31                 cy.get('[data-cy=registered-workflow-info-panel]').should('contain', workflowResource.name);
  32                 cy.get('[data-cy=workflow-details-attributes-modifiedby-user]').contains(`Active User (${activeUser.user.uuid})`);
  33             });
  34     });
  35
  36     it('should handle malformed definition', function() {
  37         cy.createResource(activeUser.token, "workflows", {workflow: {name: "Test wf", definition: "zap:"}})
  38             .then(function(workflowResource) {
  39                 cy.loginAs(activeUser);
  40                 cy.goToPath(`/workflows/${workflowResource.uuid}`);
  41                 cy.get('[data-cy=registered-workflow-info-panel]').should('contain', workflowResource.name);
  42                 cy.get('[data-cy=workflow-details-attributes-modifiedby-user]').contains(`Active User (${activeUser.user.uuid})`);
  43             });
  44     });
  45
  46     it('should handle malformed run', function() {
  47         cy.createResource(activeUser.token, "workflows", {workflow: {
  48             name: "Test wf",
  49             definition: JSON.stringify({
  50                 cwlVersion: "v1.2",
  51                 $graph: [
  52                     {
  53                         "class": "Workflow",
  54                         "id": "#main",
  55                         "inputs": [],
  56                         "outputs": [],
  57                         "requirements": [
  58                             {
  59                                 "class": "SubworkflowFeatureRequirement"
  60                             }
  61                         ],
  62                         "steps": [
  63                             {
  64                                 "id": "#main/cat1-testcli.cwl (v1.2.0-109-g9b091ed)",
  65                                 "in": [],
  66                                 "label": "cat1-testcli.cwl (v1.2.0-109-g9b091ed)",
  67                                 "out": [
  68                                     {
  69                                         "id": "#main/step/args"
  70                                     }
  71                                 ],
  72                                 "run": `keep:undefined/bar`
  73                             }
  74                         ]
  75                     }
  76                 ],
  77                 "cwlVersion": "v1.2",
  78                 "http://arvados.org/cwl#gitBranch": "1.2.1_proposed",
  79                 "http://arvados.org/cwl#gitCommit": "9b091ed7e0bef98b3312e9478c52b89ba25792de",
  80                 "http://arvados.org/cwl#gitCommitter": "GitHub <noreply@github.com>",
  81                 "http://arvados.org/cwl#gitDate": "Sun, 11 Sep 2022 21:24:42 +0200",
  82                 "http://arvados.org/cwl#gitDescribe": "v1.2.0-109-g9b091ed",
  83                 "http://arvados.org/cwl#gitOrigin": "git@github.com:common-workflow-language/cwl-v1.2",
  84                 "http://arvados.org/cwl#gitPath": "tests/cat1-testcli.cwl",
  85                 "http://arvados.org/cwl#gitStatus": ""
  86             })
  87         }}).then(function(workflowResource) {
  88             cy.loginAs(activeUser);
  89             cy.goToPath(`/workflows/${workflowResource.uuid}`);
  90             cy.get('[data-cy=registered-workflow-info-panel]').should('contain', workflowResource.name);
  91             cy.get('[data-cy=workflow-details-attributes-modifiedby-user]').contains(`Active User (${activeUser.user.uuid})`);
  92         });
  93     });
  94
  95     const verifyIOParameter = (name, label, doc, val, collection) => {
  96         cy.get('table tr').contains(name).parents('tr').within(($mainRow) => {
  97             label && cy.contains(label);
  98
  99             if (val) {
 100                 if (Array.isArray(val)) {
 101                     val.forEach(v => cy.contains(v));
 102                 } else {
 103                     cy.contains(val);
 104                 }
 105             }
 106             if (collection) {
 107                 cy.contains(collection);
 108             }
 109         });
 110     };
 111
 112     it('shows workflow details', function() {
 113         cy.createCollection(adminUser.token, {
 114             name: `Test collection ${Math.floor(Math.random() * 999999)}`,
 115             owner_uuid: activeUser.user.uuid,
 116             manifest_text: ". 37b51d194a7513e45b56f6524f2d51f2+3 0:3:bar\n"
 117         })
 118             .then(function(collectionResource) {
 119                 cy.createResource(activeUser.token, "workflows", {workflow: {
 120                     name: "Test wf",
 121                     definition: JSON.stringify({
 122                         cwlVersion: "v1.2",
 123                         $graph: [
 124                             {
 125                                 "class": "Workflow",
 126                                 "hints": [
 127                                     {
 128                                         "class": "DockerRequirement",
 129                                         "dockerPull": "python:2-slim"
 130                                     }
 131                                 ],
 132                                 "id": "#main",
 133                                 "inputs": [
 134                                     {
 135                                         "id": "#main/file1",
 136                                         "type": "File"
 137                                     },
 138                                     {
 139                                         "id": "#main/numbering",
 140                                         "type": [
 141                                             "null",
 142                                             "boolean"
 143                                         ]
 144                                     },
 145                                     {
 146                                         "default": {
 147                                             "basename": "args.py",
 148                                             "class": "File",
 149                                             "location": "keep:de738550734533c5027997c87dc5488e+53/args.py",
 150                                             "nameext": ".py",
 151                                             "nameroot": "args",
 152                                             "size": 179
 153                                         },
 154                                         "id": "#main/args.py",
 155                                         "type": "File"
 156                                     }
 157                                 ],
 158                                 "outputs": [
 159                                     {
 160                                         "id": "#main/args",
 161                                         "outputSource": "#main/step/args",
 162                                         "type": {
 163                                             "items": "string",
 164                                             "name": "_:b0adccc1-502d-476f-8a5b-c8ef7119e2dc",
 165                                             "type": "array"
 166                                         }
 167                                     }
 168                                 ],
 169                                 "requirements": [
 170                                     {
 171                                         "class": "SubworkflowFeatureRequirement"
 172                                     }
 173                                 ],
 174                                 "steps": [
 175                                     {
 176                                         "id": "#main/cat1-testcli.cwl (v1.2.0-109-g9b091ed)",
 177                                         "in": [
 178                                             {
 179                                                 "id": "#main/step/file1",
 180                                                 "source": "#main/file1"
 181                                             },
 182                                             {
 183                                                 "id": "#main/step/numbering",
 184                                                 "source": "#main/numbering"
 185                                             },
 186                                             {
 187                                                 "id": "#main/step/args.py",
 188                                                 "source": "#main/args.py"
 189                                             }
 190                                         ],
 191                                         "label": "cat1-testcli.cwl (v1.2.0-109-g9b091ed)",
 192                                         "out": [
 193                                             {
 194                                                 "id": "#main/step/args"
 195                                             }
 196                                         ],
 197                                         "run": `keep:${collectionResource.portable_data_hash}/bar`
 198                                     }
 199                                 ]
 200                             }
 201                         ],
 202                         "cwlVersion": "v1.2",
 203                         "http://arvados.org/cwl#gitBranch": "1.2.1_proposed",
 204                         "http://arvados.org/cwl#gitCommit": "9b091ed7e0bef98b3312e9478c52b89ba25792de",
 205                         "http://arvados.org/cwl#gitCommitter": "GitHub <noreply@github.com>",
 206                         "http://arvados.org/cwl#gitDate": "Sun, 11 Sep 2022 21:24:42 +0200",
 207                         "http://arvados.org/cwl#gitDescribe": "v1.2.0-109-g9b091ed",
 208                         "http://arvados.org/cwl#gitOrigin": "git@github.com:common-workflow-language/cwl-v1.2",
 209                         "http://arvados.org/cwl#gitPath": "tests/cat1-testcli.cwl",
 210                         "http://arvados.org/cwl#gitStatus": ""
 211                     })
 212                 }}).then(function(workflowResource) {
 213                     cy.loginAs(activeUser);
 214                     cy.goToPath(`/workflows/${workflowResource.uuid}`);
 215                     cy.get('[data-cy=registered-workflow-info-panel]').should('contain', workflowResource.name);
 216                     cy.get('[data-cy=workflow-details-attributes-modifiedby-user]').contains(`Active User (${activeUser.user.uuid})`);
 217                     cy.get('[data-cy=registered-workflow-info-panel')
 218                         .should('contain', 'gitCommit: 9b091ed7e0bef98b3312e9478c52b89ba25792de')
 219
 220                     cy.get('[data-cy=process-io-card] h6').contains('Inputs')
 221                         .parents('[data-cy=process-io-card]').within(() => {
 222                             verifyIOParameter('file1', null, '', '', '');
 223                             verifyIOParameter('numbering', null, '', '', '');
 224                             verifyIOParameter('args.py', null, '', 'args.py', 'de738550734533c5027997c87dc5488e+53');
 225                         });
 226                     cy.get('[data-cy=process-io-card] h6').contains('Outputs')
 227                         .parents('[data-cy=process-io-card]').within(() => {
 228                             verifyIOParameter('args', null, '', '', '');
 229                         });
 230                     cy.get('[data-cy=collection-files-panel]').within(() => {
 231                         cy.get('[data-cy=collection-files-right-panel]', { timeout: 5000 })
 232                             .should('contain', 'bar');
 233                     });
 234                 });
 235             });
 236     });
 237
 238     it('can delete a workflow', function() {
 239         cy.createResource(activeUser.token, "workflows", {workflow: {name: "Test wf"}})
 240             .then(function(workflowResource) {
 241                 cy.loginAs(activeUser);
 242                 cy.goToPath(`/projects/${activeUser.user.uuid}`);
 243                 cy.get('[data-cy=project-panel] table tbody').contains(workflowResource.name).rightclick();
 244                 cy.get('[data-cy=context-menu]').contains('Delete Workflow').click();
 245                 cy.get('[data-cy=project-panel] table tbody').should('not.contain', workflowResource.name);
 246             });
 247     });
 248
 249     it('cannot delete readonly workflow', function() {
 250         cy.createProject({
 251             owningUser: adminUser,
 252             targetUser: activeUser,
 253             projectName: 'mySharedReadonlyProject',
 254             canWrite: false,
 255         });
 256         cy.getAll('@mySharedReadonlyProject')
 257             .then(function ([mySharedReadonlyProject]) {
 258                 cy.createResource(adminUser.token, "workflows", {workflow: {name: "Test wf", owner_uuid: mySharedReadonlyProject.uuid}})
 259                     .then(function(workflowResource) {
 260                         cy.loginAs(activeUser);
 261                         cy.goToPath(`/shared-with-me`);
 262                         cy.contains("mySharedReadonlyProject").click();
 263                         cy.get('[data-cy=project-panel] table tbody').contains(workflowResource.name).rightclick();
 264                         cy.get('[data-cy=context-menu]').should("not.contain", 'Delete Workflow');
 265                     });
 266             });
 267     });
 268 });