}
```
+#### VOCABULARY_URL
+Local path, or any URL that allows cross-origin requests. See
+[Vocabulary JSON file example](public/vocabulary-example.json).
+
### Licensing
Arvados is Free Software. See COPYING for information about Arvados Free
--- /dev/null
+{
+ "strict": false,
+ "tags": {
+ "fruit": {
+ "values": ["pineapple", "tomato", "orange", "banana", "advocado", "lemon", "apple", "peach", "strawberry"],
+ "strict": true
+ },
+ "animal": {
+ "values": ["human", "dog", "elephant", "eagle"],
+ "strict": false
+ },
+ "color": {
+ "values": ["yellow", "red", "magenta", "green"],
+ "strict": false
+ },
+ "text": {},
+ "category": {
+ "values": ["experimental", "development", "production"]
+ },
+ "comments": {},
+ "importance": {
+ "values": ["critical", "important", "low priority"]
+ },
+ "size": {
+ "values": ["x-small", "small", "medium", "large", "x-large"]
+ },
+ "country": {
+ "values": ["Afghanistan","Åland Islands","Albania","Algeria","American Samoa","AndorrA","Angola","Anguilla","Antarctica","Antigua and Barbuda","Argentina","Armenia","Aruba","Australia","Austria","Azerbaijan","Bahamas","Bahrain","Bangladesh","Barbados","Belarus","Belgium","Belize","Benin","Bermuda","Bhutan","Bolivia","Bosnia and Herzegovina","Botswana","Bouvet Island","Brazil","British Indian Ocean Territory","Brunei Darussalam","Bulgaria","Burkina Faso","Burundi","Cambodia","Cameroon","Canada","Cape Verde","Cayman Islands","Central African Republic","Chad","Chile","China","Christmas Island","Cocos (Keeling) Islands","Colombia","Comoros","Congo","Congo, The Democratic Republic of the","Cook Islands","Costa Rica","Cote D'Ivoire","Croatia","Cuba","Cyprus","Czech Republic","Denmark","Djibouti","Dominica","Dominican Republic","Ecuador","Egypt","El Salvador","Equatorial Guinea","Eritrea","Estonia","Ethiopia","Falkland Islands (Malvinas)","Faroe Islands","Fiji","Finland","France","French Guiana","French Polynesia","French Southern Territories","Gabon","Gambia","Georgia","Germany","Ghana","Gibraltar","Greece","Greenland","Grenada","Guadeloupe","Guam","Guatemala","Guernsey","Guinea","Guinea-Bissau","Guyana","Haiti","Heard Island and Mcdonald Islands","Holy See (Vatican City State)","Honduras","Hong Kong","Hungary","Iceland","India","Indonesia","Iran, Islamic Republic Of","Iraq","Ireland","Isle of Man","Israel","Italy","Jamaica","Japan","Jersey","Jordan","Kazakhstan","Kenya","Kiribati","Korea, Democratic People'S Republic of","Korea, Republic of","Kuwait","Kyrgyzstan","Lao People'S Democratic Republic","Latvia","Lebanon","Lesotho","Liberia","Libyan Arab Jamahiriya","Liechtenstein","Lithuania","Luxembourg","Macao","Macedonia, The Former Yugoslav Republic of","Madagascar","Malawi","Malaysia","Maldives","Mali","Malta","Marshall Islands","Martinique","Mauritania","Mauritius","Mayotte","Mexico","Micronesia, Federated States of","Moldova, Republic of","Monaco","Mongolia","Montserrat","Morocco","Mozambique","Myanmar","Namibia","Nauru","Nepal","Netherlands","Netherlands Antilles","New Caledonia","New Zealand","Nicaragua","Niger","Nigeria","Niue","Norfolk Island","Northern Mariana Islands","Norway","Oman","Pakistan","Palau","Palestinian Territory, Occupied","Panama","Papua New Guinea","Paraguay","Peru","Philippines","Pitcairn","Poland","Portugal","Puerto Rico","Qatar","Reunion","Romania","Russian Federation","RWANDA","Saint Helena","Saint Kitts and Nevis","Saint Lucia","Saint Pierre and Miquelon","Saint Vincent and the Grenadines","Samoa","San Marino","Sao Tome and Principe","Saudi Arabia","Senegal","Serbia and Montenegro","Seychelles","Sierra Leone","Singapore","Slovakia","Slovenia","Solomon Islands","Somalia","South Africa","South Georgia and the South Sandwich Islands","Spain","Sri Lanka","Sudan","Suriname","Svalbard and Jan Mayen","Swaziland","Sweden","Switzerland","Syrian Arab Republic","Taiwan, Province of China","Tajikistan","Tanzania, United Republic of","Thailand","Timor-Leste","Togo","Tokelau","Tonga","Trinidad and Tobago","Tunisia","Turkey","Turkmenistan","Turks and Caicos Islands","Tuvalu","Uganda","Ukraine","United Arab Emirates","United Kingdom","United States","United States Minor Outlying Islands","Uruguay","Uzbekistan","Vanuatu","Venezuela","Viet Nam","Virgin Islands, British","Virgin Islands, U.S.","Wallis and Futuna","Western Sahara","Yemen","Zambia","Zimbabwe"],
+ "strict": true
+ }
+ }
+}
\ No newline at end of file
.then(config => Axios
.get<Config>(getDiscoveryURL(config.API_HOST))
.then(response => ({
- config: {...response.data, vocabularyUrl: config.VOCABULARY_URL },
+ // TODO: After tests delete `|| '/vocabulary-example.json'`
+ config: {...response.data, vocabularyUrl: config.VOCABULARY_URL || '/vocabulary-example.json' },
apiHost: config.API_HOST,
})));
localStorage.setItem(USER_LAST_NAME_KEY, "Doe");
localStorage.setItem(USER_UUID_KEY, "uuid");
localStorage.setItem(USER_OWNER_UUID_KEY, "ownerUuid");
- localStorage.setItem(USER_IS_ADMIN, JSON.stringify(false));
+ localStorage.setItem(USER_IS_ADMIN, JSON.stringify("false"));
store.dispatch(initAuth());
lastName: "Doe",
uuid: "uuid",
ownerUuid: "ownerUuid",
- isAdmin: false
+ isAdmin: true
}
});
});
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
+import { memoize } from 'lodash/fp';
import { BooleanCommandInputParameter } from '~/models/workflow';
import { Field } from 'redux-form';
import { Switch } from '@material-ui/core';
name={input.id}
commandInput={input}
component={BooleanInputComponent}
- normalize={(value, prevValue) => !prevValue}
+ normalize={normalize}
/>;
+const normalize = (_: any, prevValue: boolean) => !prevValue;
+
const BooleanInputComponent = (props: GenericInputProps) =>
<GenericInput
component={Input}
{...props} />;
-const Input = (props: GenericInputProps) =>
+const Input = ({ input, commandInput }: GenericInputProps) =>
<Switch
color='primary'
- checked={props.input.value}
- onChange={() => props.input.onChange(props.input.value)}
- disabled={props.commandInput.disabled} />;
\ No newline at end of file
+ checked={input.value}
+ onChange={handleChange(input.onChange, input.value)}
+ disabled={commandInput.disabled} />;
+
+const handleChange = memoize(
+ (onChange: (value: string) => void, value: string) => () => onChange(value)
+);
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
+import { connect, DispatchProp } from 'react-redux';
+import { memoize } from 'lodash/fp';
+import { Field } from 'redux-form';
+import { Input, Dialog, DialogTitle, DialogContent, DialogActions, Button } from '@material-ui/core';
import {
isRequiredInput,
DirectoryCommandInputParameter,
CWLType,
Directory
} from '~/models/workflow';
-import { Field } from 'redux-form';
-import { Input, Dialog, DialogTitle, DialogContent, DialogActions, Button } from '@material-ui/core';
import { GenericInputProps, GenericInput } from './generic-input';
import { ProjectsTreePicker } from '~/views-components/projects-tree-picker/projects-tree-picker';
-import { connect, DispatchProp } from 'react-redux';
import { initProjectsTreePicker } from '~/store/tree-picker/tree-picker-actions';
import { TreeItem } from '~/components/tree/tree';
import { ProjectsTreePickerItem } from '~/views-components/projects-tree-picker/generic-projects-tree-picker';
import { CollectionResource } from '~/models/collection';
import { ResourceKind } from '~/models/resource';
-import { ERROR_MESSAGE } from '../../../validators/require';
+import { ERROR_MESSAGE } from '~/validators/require';
export interface DirectoryInputProps {
input: DirectoryCommandInputParameter;
name={input.id}
commandInput={input}
component={DirectoryInputComponent}
- format={(value?: Directory) => value ? value.basename : ''}
- parse={(directory: CollectionResource): Directory => ({
- class: CWLType.DIRECTORY,
- location: `keep:${directory.portableDataHash}`,
- basename: directory.name,
- })}
- validate={[
- isRequiredInput(input)
- ? (directory?: Directory) => directory ? undefined : ERROR_MESSAGE
- : () => undefined,
- ]} />;
-
+ format={format}
+ parse={parse}
+ validate={getValidation(input)} />;
+
+const format = (value?: Directory) => value ? value.basename : '';
+
+const parse = (directory: CollectionResource): Directory => ({
+ class: CWLType.DIRECTORY,
+ location: `keep:${directory.portableDataHash}`,
+ basename: directory.name,
+});
+
+const getValidation = memoize(
+ (input: DirectoryCommandInputParameter) => ([
+ isRequiredInput(input)
+ ? (directory?: Directory) => directory ? undefined : ERROR_MESSAGE
+ : () => undefined,
+ ])
+);
interface DirectoryInputComponentState {
open: boolean;
this.props.input.onChange(this.state.directory);
}
- setDirectory = (event: React.MouseEvent<HTMLElement>, { data }: TreeItem<ProjectsTreePickerItem>, pickerId: string) => {
+ setDirectory = (_: {}, { data }: TreeItem<ProjectsTreePickerItem>) => {
if ('kind' in data && data.kind === ResourceKind.COLLECTION) {
this.setState({ directory: data });
} else {
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
-import { EnumCommandInputParameter, CommandInputEnumSchema } from '~/models/workflow';
import { Field } from 'redux-form';
import { Select, MenuItem } from '@material-ui/core';
+import { EnumCommandInputParameter, CommandInputEnumSchema } from '~/models/workflow';
import { GenericInputProps, GenericInput } from './generic-input';
export interface EnumInputProps {
onChange={props.input.onChange}
disabled={props.commandInput.disabled} >
{type.symbols.map(symbol =>
- <MenuItem key={symbol} value={symbol.split('/').pop()}>
- {symbol.split('/').pop()}
+ <MenuItem key={symbol} value={extractValue(symbol)}>
+ {extractValue(symbol)}
</MenuItem>)}
</Select>;
-};
\ No newline at end of file
+};
+
+/**
+ * Values in workflow definition have an absolute form, for example:
+ *
+ * ```#input_collector.cwl/enum_type/Pathway table```
+ *
+ * We want a value that is in form accepted by backend.
+ * According to the example above, the correct value is:
+ *
+ * ```Pathway table```
+ */
+const extractValue = (symbol: string) => symbol.split('/').pop();
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
+import { memoize } from 'lodash/fp';
import {
isRequiredInput,
FileCommandInputParameter,
name={input.id}
commandInput={input}
component={FileInputComponent}
- format={(value?: File) => value ? value.basename : ''}
- parse={(file: CollectionFile): File => ({
- class: CWLType.FILE,
- location: `keep:${file.id}`,
- basename: file.name,
- })}
- validate={[
- isRequiredInput(input)
- ? (file?: File) => file ? undefined : ERROR_MESSAGE
- : () => undefined,
- ]} />;
+ format={format}
+ parse={parse}
+ validate={getValidation(input)} />;
+const format = (value?: File) => value ? value.basename : '';
+
+const parse = (file: CollectionFile): File => ({
+ class: CWLType.FILE,
+ location: `keep:${file.id}`,
+ basename: file.name,
+});
+
+const getValidation = memoize(
+ (input: FileCommandInputParameter) => ([
+ isRequiredInput(input)
+ ? (file?: File) => file ? undefined : ERROR_MESSAGE
+ : () => undefined,
+ ]));
interface FileInputComponentState {
open: boolean;
this.props.input.onChange(this.state.file);
}
- setFile = (event: React.MouseEvent<HTMLElement>, { data }: TreeItem<ProjectsTreePickerItem>, pickerId: string) => {
+ setFile = (_: {}, { data }: TreeItem<ProjectsTreePickerItem>) => {
if ('type' in data && data.type === CollectionFileType.FILE) {
this.setState({ file: data });
} else {
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
+import { memoize } from 'lodash/fp';
import { FloatCommandInputParameter, isRequiredInput } from '~/models/workflow';
import { Field } from 'redux-form';
import { isNumber } from '~/validators/is-number';
commandInput={input}
component={Input}
parse={parseFloat}
- format={value => isNaN(value) ? '' : JSON.stringify(value)}
- validate={[
- isRequiredInput(input)
- ? isNumber
- : () => undefined,]} />;
+ format={format}
+ validate={getValidation(input)} />;
+
+const format = (value: any) => isNaN(value) ? '' : JSON.stringify(value);
+
+const getValidation = memoize(
+ (input: FloatCommandInputParameter) => ([
+ isRequiredInput(input)
+ ? isNumber
+ : () => undefined,])
+);
const Input = (props: GenericInputProps) =>
<GenericInput
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
+import { memoize } from 'lodash/fp';
import { IntCommandInputParameter, isRequiredInput } from '~/models/workflow';
import { Field } from 'redux-form';
import { isInteger } from '~/validators/is-integer';
name={input.id}
commandInput={input}
component={InputComponent}
- parse={value => parseInt(value, 10)}
- format={value => isNaN(value) ? '' : JSON.stringify(value)}
- validate={[
- isRequiredInput(input)
- ? isInteger
- : () => undefined,
- ]} />;
+ parse={parse}
+ format={format}
+ validate={getValidation(input)} />;
+
+const parse = (value: any) => parseInt(value, 10);
+
+const format = (value: any) => isNaN(value) ? '' : JSON.stringify(value);
+
+const getValidation = memoize(
+ (input: IntCommandInputParameter) => ([
+ isRequiredInput(input)
+ ? isInteger
+ : () => undefined,
+ ]));
const InputComponent = (props: GenericInputProps) =>
<GenericInput
// SPDX-License-Identifier: AGPL-3.0
import * as React from 'react';
+import { memoize } from 'lodash/fp';
import { isRequiredInput, StringCommandInputParameter } from '~/models/workflow';
import { Field } from 'redux-form';
import { require } from '~/validators/require';
name={input.id}
commandInput={input}
component={StringInputComponent}
- validate={[
- isRequiredInput(input)
- ? require
- : () => undefined,
- ]} />;
+ validate={getValidation(input)} />;
+
+const getValidation = memoize(
+ (input: StringCommandInputParameter) => ([
+ isRequiredInput(input)
+ ? require
+ : () => undefined,
+ ]));
const StringInputComponent = (props: GenericInputProps) =>
<GenericInput
projects / arvados-workbench2.git / commitdiff