X-Git-Url: https://git.arvados.org/arvados-workbench2.git/blobdiff_plain/d4b18e45f319eb0885442ab1b64a01683630e38b..31e84a9315728c2f58a26bf0e9e1d2b38326fb86:/src/index.tsx diff --git a/src/index.tsx b/src/index.tsx index 508fa7c3..43cfb5fb 100644 --- a/src/index.tsx +++ b/src/index.tsx @@ -8,26 +8,26 @@ import { Provider } from "react-redux"; import { MainPanel } from '~/views/main-panel/main-panel'; import '~/index.css'; import { Route, Switch } from 'react-router'; -import createBrowserHistory from "history/createBrowserHistory"; +import { createBrowserHistory } from "history"; import { History } from "history"; import { configureStore, RootStore } from '~/store/store'; import { ConnectedRouter } from "react-router-redux"; import { ApiToken } from "~/views-components/api-token/api-token"; -import { initAuth } from "~/store/auth/auth-action"; +import { AddSession } from "~/views-components/add-session/add-session"; +import { initAuth, logout } from "~/store/auth/auth-action"; import { createServices } from "~/services/services"; import { MuiThemeProvider } from '@material-ui/core/styles'; import { CustomTheme } from '~/common/custom-theme'; import { fetchConfig } from '~/common/config'; import { addMenuActionSet, ContextMenuKind } from '~/views-components/context-menu/context-menu'; import { rootProjectActionSet } from "~/views-components/context-menu/action-sets/root-project-action-set"; -import { projectActionSet } from "~/views-components/context-menu/action-sets/project-action-set"; +import { filterGroupActionSet, projectActionSet, readOnlyProjectActionSet } from "~/views-components/context-menu/action-sets/project-action-set"; import { resourceActionSet } from '~/views-components/context-menu/action-sets/resource-action-set'; import { favoriteActionSet } from "~/views-components/context-menu/action-sets/favorite-action-set"; -import { collectionFilesActionSet } from '~/views-components/context-menu/action-sets/collection-files-action-set'; -import { collectionFilesItemActionSet } from '~/views-components/context-menu/action-sets/collection-files-item-action-set'; +import { collectionFilesActionSet, readOnlyCollectionFilesActionSet } from '~/views-components/context-menu/action-sets/collection-files-action-set'; +import { collectionFilesItemActionSet, readOnlyCollectionFilesItemActionSet } from '~/views-components/context-menu/action-sets/collection-files-item-action-set'; import { collectionFilesNotSelectedActionSet } from '~/views-components/context-menu/action-sets/collection-files-not-selected-action-set'; -import { collectionActionSet } from '~/views-components/context-menu/action-sets/collection-action-set'; -import { collectionResourceActionSet } from '~/views-components/context-menu/action-sets/collection-resource-action-set'; +import { collectionActionSet, collectionAdminActionSet, oldCollectionVersionActionSet, readOnlyCollectionActionSet } from '~/views-components/context-menu/action-sets/collection-action-set'; import { processActionSet } from '~/views-components/context-menu/action-sets/process-action-set'; import { loadWorkbench } from '~/store/workbench/workbench-actions'; import { Routes } from '~/routes/routes'; @@ -36,18 +36,15 @@ import { ServiceRepository } from '~/services/services'; import { initWebSocket } from '~/websocket/websocket'; import { Config } from '~/common/config'; import { addRouteChangeHandlers } from './routes/route-change-handlers'; -import { setCurrentTokenDialogApiHost } from '~/store/current-token-dialog/current-token-dialog-actions'; -import { processResourceActionSet } from '~/views-components/context-menu/action-sets/process-resource-action-set'; +import { setTokenDialogApiHost } from '~/store/token-dialog/token-dialog-actions'; +import { processResourceActionSet, readOnlyProcessResourceActionSet } from '~/views-components/context-menu/action-sets/process-resource-action-set'; import { progressIndicatorActions } from '~/store/progress-indicator/progress-indicator-actions'; -import { setUuidPrefix } from '~/store/workflow-panel/workflow-panel-actions'; import { trashedCollectionActionSet } from '~/views-components/context-menu/action-sets/trashed-collection-action-set'; -import { ContainerRequestState } from '~/models/container-request'; -import { MountKind } from '~/models/mount-types'; import { setBuildInfo } from '~/store/app-info/app-info-actions'; import { getBuildInfo } from '~/common/app-info'; import { DragDropContextProvider } from 'react-dnd'; import HTML5Backend from 'react-dnd-html5-backend'; -import { initAdvanceFormProjectsTree } from '~/store/search-bar/search-bar-actions'; +import { initAdvancedFormProjectsTree } from '~/store/search-bar/search-bar-actions'; import { repositoryActionSet } from '~/views-components/context-menu/action-sets/repository-action-set'; import { sshKeyActionSet } from '~/views-components/context-menu/action-sets/ssh-key-action-set'; import { keepServiceActionSet } from '~/views-components/context-menu/action-sets/keep-service-action-set'; @@ -59,21 +56,33 @@ import { apiClientAuthorizationActionSet } from '~/views-components/context-menu import { groupActionSet } from '~/views-components/context-menu/action-sets/group-action-set'; import { groupMemberActionSet } from '~/views-components/context-menu/action-sets/group-member-action-set'; import { linkActionSet } from '~/views-components/context-menu/action-sets/link-action-set'; +import { loadFileViewersConfig } from '~/store/file-viewers/file-viewers-actions'; +import { processResourceAdminActionSet } from '~/views-components/context-menu/action-sets/process-resource-admin-action-set'; +import { filterGroupAdminActionSet, projectAdminActionSet } from '~/views-components/context-menu/action-sets/project-admin-action-set'; +import { snackbarActions, SnackbarKind } from "~/store/snackbar/snackbar-actions"; +import { openNotFoundDialog } from './store/not-found-panel/not-found-panel-action'; +import { storeRedirects } from './common/redirect-to'; console.log(`Starting arvados [${getBuildInfo()}]`); addMenuActionSet(ContextMenuKind.ROOT_PROJECT, rootProjectActionSet); addMenuActionSet(ContextMenuKind.PROJECT, projectActionSet); +addMenuActionSet(ContextMenuKind.READONLY_PROJECT, readOnlyProjectActionSet); +addMenuActionSet(ContextMenuKind.FILTER_GROUP, filterGroupActionSet); addMenuActionSet(ContextMenuKind.RESOURCE, resourceActionSet); addMenuActionSet(ContextMenuKind.FAVORITE, favoriteActionSet); addMenuActionSet(ContextMenuKind.COLLECTION_FILES, collectionFilesActionSet); +addMenuActionSet(ContextMenuKind.READONLY_COLLECTION_FILES, readOnlyCollectionFilesActionSet); addMenuActionSet(ContextMenuKind.COLLECTION_FILES_NOT_SELECTED, collectionFilesNotSelectedActionSet); addMenuActionSet(ContextMenuKind.COLLECTION_FILES_ITEM, collectionFilesItemActionSet); +addMenuActionSet(ContextMenuKind.READONLY_COLLECTION_FILES_ITEM, readOnlyCollectionFilesItemActionSet); addMenuActionSet(ContextMenuKind.COLLECTION, collectionActionSet); -addMenuActionSet(ContextMenuKind.COLLECTION_RESOURCE, collectionResourceActionSet); +addMenuActionSet(ContextMenuKind.READONLY_COLLECTION, readOnlyCollectionActionSet); +addMenuActionSet(ContextMenuKind.OLD_VERSION_COLLECTION, oldCollectionVersionActionSet); addMenuActionSet(ContextMenuKind.TRASHED_COLLECTION, trashedCollectionActionSet); addMenuActionSet(ContextMenuKind.PROCESS, processActionSet); addMenuActionSet(ContextMenuKind.PROCESS_RESOURCE, processResourceActionSet); +addMenuActionSet(ContextMenuKind.READONLY_PROCESS_RESOURCE, readOnlyProcessResourceActionSet); addMenuActionSet(ContextMenuKind.TRASH, trashActionSet); addMenuActionSet(ContextMenuKind.REPOSITORY, repositoryActionSet); addMenuActionSet(ContextMenuKind.SSH_KEY, sshKeyActionSet); @@ -85,6 +94,12 @@ addMenuActionSet(ContextMenuKind.NODE, computeNodeActionSet); addMenuActionSet(ContextMenuKind.API_CLIENT_AUTHORIZATION, apiClientAuthorizationActionSet); addMenuActionSet(ContextMenuKind.GROUPS, groupActionSet); addMenuActionSet(ContextMenuKind.GROUP_MEMBER, groupMemberActionSet); +addMenuActionSet(ContextMenuKind.COLLECTION_ADMIN, collectionAdminActionSet); +addMenuActionSet(ContextMenuKind.PROCESS_ADMIN, processResourceAdminActionSet); +addMenuActionSet(ContextMenuKind.PROJECT_ADMIN, projectAdminActionSet); +addMenuActionSet(ContextMenuKind.FILTER_GROUP_ADMIN, filterGroupAdminActionSet); + +storeRedirects(); fetchConfig() .then(({ config, apiHost }) => { @@ -93,21 +108,39 @@ fetchConfig() progressFn: (id, working) => { store.dispatch(progressIndicatorActions.TOGGLE_WORKING({ id, working })); }, - errorFn: (id, error) => { - // console.error("Backend error:", error); - // store.dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Backend error", kind: SnackbarKind.ERROR })); + errorFn: (id, error, showSnackBar) => { + if (showSnackBar) { + console.error("Backend error:", error); + + if (error.status === 404) { + store.dispatch(openNotFoundDialog()); + } else if (error.status === 401 && error.errors[0].indexOf("Not logged in") > -1) { + store.dispatch(logout()); + } else { + store.dispatch(snackbarActions.OPEN_SNACKBAR({ + message: `${error.errors + ? error.errors[0] + : error.message}`, + kind: SnackbarKind.ERROR, + hideDuration: 8000 + }) + ); + } + } } }); - const store = configureStore(history, services); + const store = configureStore(history, services, config); store.subscribe(initListener(history, store, services, config)); - store.dispatch(initAuth()); + store.dispatch(initAuth(config)); store.dispatch(setBuildInfo()); - store.dispatch(setCurrentTokenDialogApiHost(apiHost)); - store.dispatch(setUuidPrefix(config.uuidPrefix)); + store.dispatch(setTokenDialogApiHost(apiHost)); store.dispatch(loadVocabulary); + store.dispatch(loadFileViewersConfig); - const TokenComponent = (props: any) => ; + const TokenComponent = (props: any) => ; + const AddSessionComponent = (props: any) => ; + const FedTokenComponent = (props: any) => ; const MainPanelComponent = (props: any) => ; const App = () => @@ -117,6 +150,8 @@ fetchConfig() + + @@ -140,186 +175,7 @@ const initListener = (history: History, store: RootStore, services: ServiceRepos await store.dispatch(loadWorkbench()); addRouteChangeHandlers(history, store); // ToDo: move to searchBar component - store.dispatch(initAdvanceFormProjectsTree()); + store.dispatch(initAdvancedFormProjectsTree()); } }; }; - -const createDirectoriesArrayCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'Directories array collector', - description: 'Workflow for collecting directories array', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"multiple_collections\":\n $(inputs.multiple_collections)\n\n class: InitialWorkDirRequirement\n inputs:\n - type:\n type: array\n items: Directory\n id: '#input_collector.cwl/multiple_collections'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type:\n type: array\n items: Directory\n label: Multiple Collections\n doc: This should allow for selecting multiple collections.\n id: '#main/multiple_collections'\n default:\n - class: Directory\n location: keep:1e1682585d576f031b2d8b4944f989ee+57\n basename: 1e1682585d576f031b2d8b4944f989ee+57\n - class: Directory\n location: keep:326f692370e9e121fcbd013796f7352a+57\n basename: 326f692370e9e121fcbd013796f7352a+57\n \n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/multiple_collections'\n id: '#main/input_collector/multiple_collections'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createPrimitiveArraysCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'String, Int and Float arrays collector', - description: 'Workflow for collecting primitive data arrays', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"string array\":\n $(inputs.example_string_array)\n \"int array\":\n $(inputs.example_int_array)\n \"float array\":\n $(inputs.example_float_array)\n\n class: InitialWorkDirRequirement\n inputs:\n - type:\n type: array\n items: string\n id: '#input_collector.cwl/example_string_array'\n - type:\n type: array\n items: int\n id: '#input_collector.cwl/example_int_array'\n - type:\n type: array\n items: float\n id: '#input_collector.cwl/example_float_array'\n \n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type:\n type: array\n items: string\n label: Freetext Array\n doc: This should allow for entering multiple strings.\n id: '#main/example_string_array'\n default:\n - This is the first string\n - This is the second string\n - type:\n type: array\n items: int\n label: Integer Array\n doc: This should allow for entering multiple integers.\n id: '#main/example_int_array'\n default:\n - 3\n - 6\n - type:\n type: array\n items: float\n label: Float Array\n doc: This should allow for entering multiple floats.\n id: '#main/example_float_array'\n default:\n - 3.33\n - 66.6\n\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/example_string_array'\n id: '#main/input_collector/example_string_array'\n - source: '#main/example_int_array'\n id: '#main/input_collector/example_int_array'\n - source: '#main/example_float_array'\n id: '#main/input_collector/example_float_array'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createFilesArrayCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'Files array collector', - description: 'Workflow for collecting files array', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"multiple_files\":\n $(inputs.multiple_files)\n\n class: InitialWorkDirRequirement\n inputs:\n - type:\n type: array\n items: File\n id: '#input_collector.cwl/multiple_files'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n\n baseCommand: [cat]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type:\n type: array\n items: File\n label: Multiple Files\n doc: This should allow for selecting multiple files.\n id: '#main/multiple_files'\n default:\n - class: File\n location: keep:af831660d820bcbb98f473355e6e1b85+67/fileA\n basename: fileA\n nameroot: fileA\n nameext: ''\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/multiple_files'\n id: '#main/input_collector/multiple_files'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createPrimitivesCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'Primitive values collector', - description: 'Workflow for collecting primitive values', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"flag\":\n $(inputs.example_flag)\n \"string\":\n $(inputs.example_string)\n \"int\":\n $(inputs.example_int)\n \"long\":\n $(inputs.example_long)\n \"float\":\n $(inputs.example_float)\n \"double\":\n $(inputs.example_double)\n class: InitialWorkDirRequirement\n inputs:\n - type: double\n id: '#input_collector.cwl/example_double'\n - type: boolean\n id: '#input_collector.cwl/example_flag'\n - type: float\n id: '#input_collector.cwl/example_float'\n - type: int\n id: '#input_collector.cwl/example_int'\n - type: long\n id: '#input_collector.cwl/example_long'\n - type: string\n id: '#input_collector.cwl/example_string'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: Workflw for collecting primitive values\n inputs:\n - type: double\n label: Double value\n doc: This should allow for entering a decimal number (64-bit).\n id: '#main/example_double'\n default: 0.3333333333333333\n - type: boolean\n label: Boolean Flag\n doc: This should render as in checkbox.\n id: '#main/example_flag'\n default: true\n - type: float\n label: Float value\n doc: This should allow for entering a decimal number (32-bit).\n id: '#main/example_float'\n default: 0.15625\n - type: int\n label: Integer Number\n doc: This should allow for entering a number (32-bit signed).\n id: '#main/example_int'\n default: 2147483647\n - type: long\n label: Long Number\n doc: This should allow for entering a number (64-bit signed).\n id: '#main/example_long'\n default: 9223372036854775807\n - type: string\n label: Freetext\n doc: This should allow for entering an arbitrary char sequence.\n id: '#main/example_string'\n default: This is a string\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/example_double'\n id: '#main/input_collector/example_double'\n - source: '#main/example_flag'\n id: '#main/input_collector/example_flag'\n - source: '#main/example_float'\n id: '#main/input_collector/example_float'\n - source: '#main/example_int'\n id: '#main/input_collector/example_int'\n - source: '#main/example_long'\n id: '#main/input_collector/example_long'\n - source: '#main/example_string'\n id: '#main/input_collector/example_string'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createEnumCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'Enum values collector', - description: 'Workflow for collecting enum values', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"enum_type\":\n $(inputs.enum_type)\n\n class: InitialWorkDirRequirement\n inputs:\n - type:\n type: enum\n symbols: ['#input_collector.cwl/enum_type/OTU table', '#input_collector.cwl/enum_type/Pathway\n table', '#input_collector.cwl/enum_type/Function table', '#input_collector.cwl/enum_type/Ortholog\n table']\n id: '#input_collector.cwl/enum_type'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type:\n type: enum\n symbols: ['#main/enum_type/OTU table', '#main/enum_type/Pathway table', '#main/enum_type/Function\n table', '#main/enum_type/Ortholog table']\n name: '#enum_typef4179c7f-45f9-482d-a5db-1abb86698384'\n label: Enumeration Type\n doc: This should render as a drop-down menu.\n id: '#main/enum_type'\n default: OTU table\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/enum_type'\n id: '#main/input_collector/enum_type'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createFilesCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'File values collector', - description: 'Workflow for collecting file values', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"single_file\":\n $(inputs.single_file.basename)\n \"optional_file\":\n $(inputs.optional_file.basename)\n\n class: InitialWorkDirRequirement\n inputs:\n - type:\n - 'null'\n - File\n id: '#input_collector.cwl/optional_file'\n - type:\n - 'null'\n - File\n id: '#input_collector.cwl/optional_file_missing_label'\n - type: File\n id: '#input_collector.cwl/single_file'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type:\n - 'null'\n - File\n label: Single File (Optional)\n doc: This should allow for single File selection only. Input should be marked\n as optional and not enforced by form validation.\n id: '#main/optional_file'\n default:\n class: File\n location: keep:af831660d820bcbb98f473355e6e1b85+67/fileA\n basename: fileA\n nameroot: fileA\n nameext: ''\n - type:\n - 'null'\n - File\n doc: Label should be the input field name because of missing label.\n id: '#main/optional_file_missing_label'\n - type: File\n label: Single File\n doc: This should allow for single File selection only.\n id: '#main/single_file'\n default:\n class: File\n location: keep:af831660d820bcbb98f473355e6e1b85+67/fileA\n basename: fileA\n nameroot: fileA\n nameext: ''\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/optional_file'\n id: '#main/input_collector/optional_file'\n - source: '#main/single_file'\n id: '#main/input_collector/single_file'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createCollectionCollectorWorkflow = ({ workflowService }: ServiceRepository) => { - workflowService.create({ - name: 'Collection value collector', - description: 'Workflow for collecting a collecion', - definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"collection\":\n $(inputs.collection.location)\n\n class: InitialWorkDirRequirement\n inputs:\n - type: Directory\n id: '#input_collector.cwl/collection'\n\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type: Directory\n label: Single Collection\n doc: This should allow for single Collection selection only.\n id: '#main/collection'\n default:\n class: Directory\n location: keep:af831660d820bcbb98f473355e6e1b85+67\n basename: af831660d820bcbb98f473355e6e1b85+67\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/collection'\n id: '#main/input_collector/collection'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n", - }); -}; - -const createSampleProcess = ({ containerRequestService }: ServiceRepository) => { - containerRequestService.create({ - ownerUuid: 'c97qk-j7d0g-s3ngc1z0748hsmf', - name: 'Simple process 7', - state: ContainerRequestState.COMMITTED, - mounts: { - '/var/spool/cwl': { - kind: MountKind.COLLECTION, - writable: true, - }, - 'stdout': { - kind: MountKind.MOUNTED_FILE, - path: '/var/spool/cwl/cwl.output.json' - }, - '/var/lib/cwl/workflow.json': { - kind: MountKind.JSON, - content: { - "cwlVersion": "v1.0", - "$graph": [ - { - "class": "CommandLineTool", - "requirements": [ - { - "listing": [ - { - "entryname": "input_collector.log", - "entry": "$(inputs.single_file.basename)\n" - } - ], - "class": "InitialWorkDirRequirement" - } - ], - "inputs": [ - { - "type": "File", - "id": "#input_collector.cwl/single_file" - } - ], - "outputs": [ - { - "type": "File", - "outputBinding": { - "glob": "*" - }, - "id": "#input_collector.cwl/output" - } - ], - "baseCommand": [ - "echo" - ], - "id": "#input_collector.cwl" - }, - { - "class": "Workflow", - "doc": "This is the description of the workflow", - "inputs": [ - { - "type": "File", - "label": "Single File", - "doc": "This should allow for single File selection only.", - "id": "#main/single_file" - } - ], - "outputs": [ - { - "type": "File", - "outputSource": "#main/input_collector/output", - "id": "#main/log_file" - } - ], - "steps": [ - { - "run": "#input_collector.cwl", - "in": [ - { - "source": "#main/single_file", - "id": "#main/input_collector/single_file" - } - ], - "out": [ - "#main/input_collector/output" - ], - "id": "#main/input_collector" - } - ], - "id": "#main" - } - ] - }, - }, - '/var/lib/cwl/cwl.input.json': { - kind: MountKind.JSON, - content: { - "single_file": { - "class": "File", - "location": "keep:233454526794c0a2d56a305baeff3d30+145/1.txt", - "basename": "fileA" - } - }, - } - }, - runtimeConstraints: { - API: true, - vcpus: 1, - ram: 1073741824, - }, - containerImage: 'arvados/jobs:1.1.4.20180618144723', - cwd: '/var/spool/cwl', - command: [ - 'arvados-cwl-runner', - '--local', - '--api=containers', - "--project-uuid=c97qk-j7d0g-s3ngc1z0748hsmf", - '/var/lib/cwl/workflow.json#main', - '/var/lib/cwl/cwl.input.json' - ], - outputPath: '/var/spool/cwl', - priority: 1, - }); -}; - -// force build comment #1