// SPDX-License-Identifier: AGPL-3.0
import { Dispatch } from "redux";
-import { RootState } from '~/store/store';
-import { ServiceRepository } from '~/services/services';
-import { updateResources } from '~/store/resources/resources-actions';
-import { FilterBuilder } from '~/services/api/filter-builder';
-import { ContainerRequestResource } from '~/models/container-request';
+import { RootState } from 'store/store';
+import { ServiceRepository } from 'services/services';
+import { updateResources } from 'store/resources/resources-actions';
import { Process } from './process';
-import { dialogActions } from '~/store/dialog/dialog-actions';
-import { snackbarActions, SnackbarKind } from '~/store/snackbar/snackbar-actions';
-import { projectPanelActions } from '~/store/project-panel/project-panel-action';
-import { navigateToRunProcess } from '~/store/navigation/navigation-action';
-import { goToStep, runProcessPanelActions } from '~/store/run-process-panel/run-process-panel-actions';
-import { getResource } from '~/store/resources/resources';
+import { dialogActions } from 'store/dialog/dialog-actions';
+import { snackbarActions, SnackbarKind } from 'store/snackbar/snackbar-actions';
+import { projectPanelActions } from 'store/project-panel/project-panel-action';
+import { navigateToRunProcess } from 'store/navigation/navigation-action';
+import { goToStep, runProcessPanelActions } from 'store/run-process-panel/run-process-panel-actions';
+import { getResource } from 'store/resources/resources';
import { initialize } from "redux-form";
-import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "~/views/run-process-panel/run-process-basic-form";
-import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "~/views/run-process-panel/run-process-advanced-form";
-import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from '~/models/process';
-import { getWorkflow, getWorkflowInputs } from "~/models/workflow";
+import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "views/run-process-panel/run-process-basic-form";
+import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "views/run-process-panel/run-process-advanced-form";
+import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from 'models/process';
+import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs } from "models/workflow";
+import { ProjectResource } from "models/project";
+import { UserResource } from "models/user";
+import { CommandOutputParameter } from "cwlts/mappings/v1.0/CommandOutputParameter";
export const loadProcess = (containerRequestUuid: string) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process> => {
- const response = await services.workflowService.list();
- dispatch(runProcessPanelActions.SET_WORKFLOWS(response.items));
const containerRequest = await services.containerRequestService.get(containerRequestUuid);
dispatch<any>(updateResources([containerRequest]));
+
+ if (containerRequest.outputUuid) {
+ const collection = await services.collectionService.get(containerRequest.outputUuid);
+ dispatch<any>(updateResources([collection]));
+ }
+
if (containerRequest.containerUuid) {
const container = await services.containerService.get(containerRequest.containerUuid);
dispatch<any>(updateResources([container]));
- await dispatch<any>(loadSubprocesses(containerRequest.containerUuid));
+ if (container.runtimeUserUuid) {
+ const runtimeUser = await services.userService.get(container.runtimeUserUuid);
+ dispatch<any>(updateResources([runtimeUser]));
+ }
return { containerRequest, container };
}
return { containerRequest };
};
-export const loadSubprocesses = (containerUuid: string) =>
+export const loadContainers = (filters: string, loadMounts: boolean = true) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- const containerRequests = await dispatch<any>(loadContainerRequests(
- new FilterBuilder().addEqual('requestingContainerUuid', containerUuid).getFilters()
- )) as ContainerRequestResource[];
-
- const containerUuids: string[] = containerRequests.reduce((uuids, { containerUuid }) =>
- containerUuid
- ? [...uuids, containerUuid]
- : uuids, []);
-
- if (containerUuids.length > 0) {
- await dispatch<any>(loadContainers(
- new FilterBuilder().addIn('uuid', containerUuids).getFilters()
- ));
+ let args: any = { filters };
+ if (!loadMounts) {
+ args.select = containerFieldsNoMounts;
}
- };
-
-const MAX_AMOUNT_OF_SUBPROCESSES = 10000;
-
-export const loadContainerRequests = (filters: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- const { items } = await services.containerRequestService.list({ filters, limit: MAX_AMOUNT_OF_SUBPROCESSES });
+ const { items } = await services.containerService.list(args);
dispatch<any>(updateResources(items));
return items;
};
-export const loadContainers = (filters: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- const { items } = await services.containerService.list({ filters });
- dispatch<any>(updateResources(items));
- return items;
- };
+// Until the api supports unselecting fields, we need a list of all other fields to omit mounts
+const containerFieldsNoMounts = [
+ "auth_uuid",
+ "command",
+ "container_image",
+ "created_at",
+ "cwd",
+ "environment",
+ "etag",
+ "exit_code",
+ "finished_at",
+ "gateway_address",
+ "href",
+ "interactive_session_started",
+ "kind",
+ "lock_count",
+ "locked_by_uuid",
+ "log",
+ "modified_at",
+ "modified_by_client_uuid",
+ "modified_by_user_uuid",
+ "output_path",
+ "output_properties",
+ "output_storage_classes",
+ "output",
+ "owner_uuid",
+ "priority",
+ "progress",
+ "runtime_auth_scopes",
+ "runtime_constraints",
+ "runtime_status",
+ "runtime_user_uuid",
+ "scheduling_parameters",
+ "started_at",
+ "state",
+ "uuid",
+]
export const cancelRunningWorkflow = (uuid: string) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
const stringifiedDefinition = JSON.stringify(process.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
const newWorkflow = { ...workflow, definition: stringifiedDefinition };
- const basicInitialData: RunProcessBasicFormData = { name: `Copy of: ${process.name}`, description: process.description };
+ const owner = getResource<ProjectResource | UserResource>(workflow.ownerUuid)(getState().resources);
+ const basicInitialData: RunProcessBasicFormData = { name: `Copy of: ${process.name}`, description: process.description, owner };
dispatch<any>(initialize(RUN_PROCESS_BASIC_FORM, basicInitialData));
const advancedInitialData: RunProcessAdvancedFormData = {
ram: process.runtimeConstraints.ram,
vcpus: process.runtimeConstraints.vcpus,
keep_cache_ram: process.runtimeConstraints.keep_cache_ram,
- api: process.runtimeConstraints.API
+ acr_container_image: process.containerImage
};
dispatch<any>(initialize(RUN_PROCESS_ADVANCED_FORM, advancedInitialData));
}
};
-const getInputs = (data: any) => {
+/*
+ * Fetches raw inputs from containerRequest mounts with fallback to properties
+ * Returns undefined if containerRequest not loaded
+ * Returns [] if inputs not found in mounts or props
+ */
+export const getRawInputs = (data: any): CommandInputParameter[] | undefined => {
+ if (!data) { return undefined; }
+ const mountInput = data.mounts?.[MOUNT_PATH_CWL_INPUT]?.content;
+ const propsInput = data.properties?.cwl_input;
+ if (!mountInput && !propsInput) { return []; }
+ return (mountInput || propsInput);
+}
+
+export const getInputs = (data: any): CommandInputParameter[] => {
+ // Definitions from mounts are needed so we return early if missing
if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
+ const content = getRawInputs(data) as any;
+ if (!content) { return []; }
+
const inputs = getWorkflowInputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
return inputs ? inputs.map(
(it: any) => (
type: it.type,
id: it.id,
label: it.label,
- default: data.mounts[MOUNT_PATH_CWL_INPUT].content[it.id],
+ default: content[it.id],
+ value: content[it.id.split('/').pop()] || [],
doc: it.doc
}
- )
+ )
+ ) : [];
+};
+
+/*
+ * Fetches raw outputs from containerRequest properties
+ * Assumes containerRequest is loaded
+ */
+export const getRawOutputs = (data: any): CommandInputParameter[] | undefined => {
+ if (!data || !data.properties || !data.properties.cwl_output) { return undefined; }
+ return (data.properties.cwl_output);
+}
+
+export type InputCollectionMount = {
+ path: string;
+ pdh: string;
+}
+
+export const getInputCollectionMounts = (data: any): InputCollectionMount[] => {
+ if (!data || !data.mounts) { return []; }
+ return Object.keys(data.mounts)
+ .map(key => ({
+ ...data.mounts[key],
+ path: key,
+ }))
+ .filter(mount => mount.kind === 'collection' &&
+ mount.portable_data_hash &&
+ mount.path)
+ .map(mount => ({
+ path: mount.path,
+ pdh: mount.portable_data_hash,
+ }));
+};
+
+export const getOutputParameters = (data: any): CommandOutputParameter[] => {
+ if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
+ const outputs = getWorkflowOutputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
+ return outputs ? outputs.map(
+ (it: any) => (
+ {
+ type: it.type,
+ id: it.id,
+ label: it.label,
+ doc: it.doc
+ }
+ )
) : [];
};
dispatch(projectPanelActions.REQUEST_ITEMS());
dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removed.', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
};
-
-
projects / arvados-workbench2.git / blobdiff