// SPDX-License-Identifier: AGPL-3.0
import { unionize, ofType, UnionOf } from "common/unionize";
-import { getInputs, getOutputParameters, getRawInputs, getRawOutputs, loadProcess } from 'store/processes/processes-actions';
-import { Dispatch } from 'redux';
-import { ProcessStatus } from 'store/processes/process';
-import { RootState } from 'store/store';
+import { getInputs, getOutputParameters, getRawInputs, getRawOutputs, loadProcess } from "store/processes/processes-actions";
+import { Dispatch } from "redux";
+import { ProcessStatus } from "store/processes/process";
+import { RootState } from "store/store";
import { ServiceRepository } from "services/services";
-import { navigateTo, navigateToWorkflows } from 'store/navigation/navigation-action';
-import { snackbarActions } from 'store/snackbar/snackbar-actions';
-import { SnackbarKind } from '../snackbar/snackbar-actions';
-import { showWorkflowDetails } from 'store/workflow-panel/workflow-panel-actions';
-import { loadSubprocessPanel } from "../subprocess-panel/subprocess-panel-actions";
+import { navigateTo } from "store/navigation/navigation-action";
+import { snackbarActions } from "store/snackbar/snackbar-actions";
+import { SnackbarKind } from "../snackbar/snackbar-actions";
+import { loadSubprocessPanel, subprocessPanelActions } from "../subprocess-panel/subprocess-panel-actions";
import { initProcessLogsPanel, processLogsPanelActions } from "store/process-logs-panel/process-logs-panel-actions";
import { CollectionFile } from "models/collection-file";
import { ContainerRequestResource } from "models/container-request";
-import { CommandOutputParameter } from 'cwlts/mappings/v1.0/CommandOutputParameter';
-import { CommandInputParameter, getIOParamId, WorkflowInputsData } from 'models/workflow';
+import { CommandOutputParameter } from "cwlts/mappings/v1.0/CommandOutputParameter";
+import { CommandInputParameter, getIOParamId, WorkflowInputsData } from "models/workflow";
import { getIOParamDisplayValue, ProcessIOParameter } from "views/process-panel/process-io-card";
-import { OutputDetails } from "./process-panel";
+import { OutputDetails, NodeInstanceType, NodeInfo } from "./process-panel";
import { AuthState } from "store/auth/auth-reducer";
+import { ContextMenuResource } from "store/context-menu/context-menu-actions";
export const processPanelActions = unionize({
RESET_PROCESS_PANEL: ofType<{}>(),
SET_OUTPUT_RAW: ofType<OutputDetails | null>(),
SET_OUTPUT_DEFINITIONS: ofType<CommandOutputParameter[]>(),
SET_OUTPUT_PARAMS: ofType<ProcessIOParameter[] | null>(),
+ SET_NODE_INFO: ofType<NodeInfo>(),
});
export type ProcessPanelAction = UnionOf<typeof processPanelActions>;
export const toggleProcessPanelFilter = processPanelActions.TOGGLE_PROCESS_PANEL_FILTER;
-export const loadProcessPanel = (uuid: string) =>
- async (dispatch: Dispatch) => {
- dispatch(processPanelActions.RESET_PROCESS_PANEL());
- dispatch(processLogsPanelActions.RESET_PROCESS_LOGS_PANEL());
- dispatch<ProcessPanelAction>(processPanelActions.SET_PROCESS_PANEL_CONTAINER_REQUEST_UUID(uuid));
- await dispatch<any>(loadProcess(uuid));
- dispatch(initProcessPanelFilters);
- dispatch<any>(initProcessLogsPanel(uuid));
- dispatch<any>(loadSubprocessPanel());
- };
+export const loadProcessPanel = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState) => {
+ // Reset subprocess data explorer if navigating to new process
+ // Avoids resetting pagination when refreshing same process
+ if (getState().processPanel.containerRequestUuid !== uuid) {
+ dispatch(subprocessPanelActions.CLEAR());
+ }
+ dispatch(processPanelActions.RESET_PROCESS_PANEL());
+ dispatch(processLogsPanelActions.RESET_PROCESS_LOGS_PANEL());
+ dispatch<ProcessPanelAction>(processPanelActions.SET_PROCESS_PANEL_CONTAINER_REQUEST_UUID(uuid));
+ await dispatch<any>(loadProcess(uuid));
+ dispatch(initProcessPanelFilters);
+ dispatch<any>(initProcessLogsPanel(uuid));
+ dispatch<any>(loadSubprocessPanel());
+};
-export const navigateToOutput = (uuid: string) =>
- async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
- try {
- await services.collectionService.get(uuid);
- dispatch<any>(navigateTo(uuid));
- } catch {
- dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'This collection does not exists!', hideDuration: 2000, kind: SnackbarKind.ERROR }));
- }
- };
+export const navigateToOutput = (resource: ContextMenuResource | ContainerRequestResource) => async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ await services.collectionService.get(resource.outputUuid || '');
+ dispatch<any>(navigateTo(resource.outputUuid || ''));
+ } catch {
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Output collection was trashed or deleted.", hideDuration: 4000, kind: SnackbarKind.WARNING }));
+ }
+};
-export const loadInputs = (containerRequest: ContainerRequestResource) =>
- async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
+export const loadInputs =
+ (containerRequest: ContainerRequestResource) => async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
dispatch<ProcessPanelAction>(processPanelActions.SET_INPUT_RAW(getRawInputs(containerRequest)));
dispatch<ProcessPanelAction>(processPanelActions.SET_INPUT_PARAMS(formatInputData(getInputs(containerRequest), getState().auth)));
};
-export const loadOutputs = (containerRequest: ContainerRequestResource) =>
- async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
- const noOutputs = {rawOutputs: {}};
+export const loadOutputs =
+ (containerRequest: ContainerRequestResource) => async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
+ const noOutputs = { rawOutputs: {} };
+
if (!containerRequest.outputUuid) {
- dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW(noOutputs));
+ dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW({ uuid: containerRequest.uuid, outputRaw: noOutputs }));
return;
- };
+ }
try {
const propsOutputs = getRawOutputs(containerRequest);
const filesPromise = services.collectionService.files(containerRequest.outputUuid);
// If has propsOutput, skip fetching cwl.output.json
if (propsOutputs !== undefined) {
- dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW({
- rawOutputs: propsOutputs,
- pdh: collection.portableDataHash
- }));
+ dispatch<ProcessPanelAction>(
+ processPanelActions.SET_OUTPUT_RAW({
+ rawOutputs: propsOutputs,
+ pdh: collection.portableDataHash,
+ })
+ );
} else {
// Fetch outputs from keep
- const outputFile = files.find((file) => file.name === 'cwl.output.json') as CollectionFile | undefined;
+ const outputFile = files.find(file => file.name === "cwl.output.json") as CollectionFile | undefined;
let outputData = outputFile ? await services.collectionService.getFileContents(outputFile) : undefined;
if (outputData && (outputData = JSON.parse(outputData)) && collection.portableDataHash) {
- dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW({
- rawOutputs: outputData,
- pdh: collection.portableDataHash,
- }));
+ dispatch<ProcessPanelAction>(
+ processPanelActions.SET_OUTPUT_RAW({
+ uuid: containerRequest.uuid,
+ outputRaw: { rawOutputs: outputData, pdh: collection.portableDataHash },
+ })
+ );
} else {
- dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW(noOutputs));
+ dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW({ uuid: containerRequest.uuid, outputRaw: noOutputs }));
}
}
} catch {
- dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW(noOutputs));
+ dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_RAW({ uuid: containerRequest.uuid, outputRaw: noOutputs }));
+ }
+ };
+
+export const loadNodeJson =
+ (containerRequest: ContainerRequestResource) => async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
+ const noLog = { nodeInfo: null };
+ if (!containerRequest.logUuid) {
+ dispatch<ProcessPanelAction>(processPanelActions.SET_NODE_INFO(noLog));
+ return;
+ }
+ try {
+ const filesPromise = services.collectionService.files(containerRequest.logUuid);
+ const collectionPromise = services.collectionService.get(containerRequest.logUuid);
+ const [files] = await Promise.all([filesPromise, collectionPromise]);
+
+ // Fetch node.json from keep
+ const nodeFile = files.find(file => file.name === "node.json") as CollectionFile | undefined;
+ let nodeData = nodeFile ? await services.collectionService.getFileContents(nodeFile) : undefined;
+ if (nodeData && (nodeData = JSON.parse(nodeData))) {
+ dispatch<ProcessPanelAction>(
+ processPanelActions.SET_NODE_INFO({
+ nodeInfo: nodeData as NodeInstanceType,
+ })
+ );
+ } else {
+ dispatch<ProcessPanelAction>(processPanelActions.SET_NODE_INFO(noLog));
+ }
+ } catch {
+ dispatch<ProcessPanelAction>(processPanelActions.SET_NODE_INFO(noLog));
}
};
-export const loadOutputDefinitions = (containerRequest: ContainerRequestResource) =>
- async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
+export const loadOutputDefinitions =
+ (containerRequest: ContainerRequestResource) => async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
if (containerRequest && containerRequest.mounts) {
dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_DEFINITIONS(getOutputParameters(containerRequest)));
}
};
-export const updateOutputParams = () =>
- async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
- const outputDefinitions = getState().processPanel.outputDefinitions;
- const outputRaw = getState().processPanel.outputRaw;
+export const updateOutputParams = () => async (dispatch: Dispatch<any>, getState: () => RootState, services: ServiceRepository) => {
+ const outputDefinitions = getState().processPanel.outputDefinitions;
+ const outputRaw = getState().processPanel.outputRaw;
- if (outputRaw !== null && outputRaw.rawOutputs) {
- dispatch<ProcessPanelAction>(processPanelActions.SET_OUTPUT_PARAMS(formatOutputData(outputDefinitions, outputRaw.rawOutputs, outputRaw.pdh, getState().auth)));
- }
- };
+ if (outputRaw && outputRaw.rawOutputs) {
+ dispatch<ProcessPanelAction>(
+ processPanelActions.SET_OUTPUT_PARAMS(formatOutputData(outputDefinitions, outputRaw.rawOutputs, outputRaw.pdh, getState().auth))
+ );
+ }
+};
-export const openWorkflow = (uuid: string) =>
- (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- dispatch<any>(navigateToWorkflows);
- dispatch<any>(showWorkflowDetails(uuid));
- };
+export const openWorkflow = (uuid: string) => (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ dispatch<any>(navigateTo(uuid));
+};
export const initProcessPanelFilters = processPanelActions.SET_PROCESS_PANEL_FILTERS([
ProcessStatus.QUEUED,
ProcessStatus.ONHOLD,
ProcessStatus.FAILING,
ProcessStatus.WARNING,
- ProcessStatus.CANCELLED
+ ProcessStatus.CANCELLED,
]);
-const formatInputData = (inputs: CommandInputParameter[], auth: AuthState): ProcessIOParameter[] => {
+export const formatInputData = (inputs: CommandInputParameter[], auth: AuthState): ProcessIOParameter[] => {
return inputs.map(input => {
return {
id: getIOParamId(input),
label: input.label || "",
- value: getIOParamDisplayValue(auth, input)
+ value: getIOParamDisplayValue(auth, input),
};
});
};
-const formatOutputData = (definitions: CommandOutputParameter[], values: any, pdh: string | undefined, auth: AuthState): ProcessIOParameter[] => {
+export const formatOutputData = (
+ definitions: CommandOutputParameter[],
+ values: any,
+ pdh: string | undefined,
+ auth: AuthState
+): ProcessIOParameter[] => {
return definitions.map(output => {
return {
id: getIOParamId(output),
label: output.label || "",
- value: getIOParamDisplayValue(auth, Object.assign(output, { value: values[getIOParamId(output)] || [] }), pdh)
+ value: getIOParamDisplayValue(auth, Object.assign(output, { value: values[getIOParamId(output)] || [] }), pdh),
};
});
};