// SPDX-License-Identifier: AGPL-3.0
import { Dispatch } from "redux";
-import { RootState } from 'store/store';
-import { ServiceRepository } from 'services/services';
-import { updateResources } from 'store/resources/resources-actions';
-import { Process } from './process';
-import { dialogActions } from 'store/dialog/dialog-actions';
-import { snackbarActions, SnackbarKind } from 'store/snackbar/snackbar-actions';
-import { projectPanelActions } from 'store/project-panel/project-panel-action';
-import { navigateToRunProcess } from 'store/navigation/navigation-action';
-import { goToStep, runProcessPanelActions } from 'store/run-process-panel/run-process-panel-actions';
-import { getResource } from 'store/resources/resources';
+import { RootState } from "store/store";
+import { ServiceRepository } from "services/services";
+import { updateResources } from "store/resources/resources-actions";
+import { Process } from "./process";
+import { dialogActions } from "store/dialog/dialog-actions";
+import { snackbarActions, SnackbarKind } from "store/snackbar/snackbar-actions";
+import { projectPanelActions } from "store/project-panel/project-panel-action-bind";
+import { navigateToRunProcess } from "store/navigation/navigation-action";
+import { goToStep, runProcessPanelActions } from "store/run-process-panel/run-process-panel-actions";
+import { getResource } from "store/resources/resources";
import { initialize } from "redux-form";
import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "views/run-process-panel/run-process-basic-form";
import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "views/run-process-panel/run-process-advanced-form";
-import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from 'models/process';
-import { getWorkflow, getWorkflowInputs } from "models/workflow";
+import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from "models/process";
+import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs, WorkflowInputsData } from "models/workflow";
import { ProjectResource } from "models/project";
import { UserResource } from "models/user";
+import { CommandOutputParameter } from "cwlts/mappings/v1.0/CommandOutputParameter";
+import { ContainerResource } from "models/container";
+import { ContainerRequestResource, ContainerRequestState } from "models/container-request";
+import { FilterBuilder } from "services/api/filter-builder";
+import { selectedToArray } from "components/multiselect-toolbar/MultiselectToolbar";
+import { Resource, ResourceKind } from "models/resource";
+import { ContextMenuResource } from "store/context-menu/context-menu-actions";
+import { CommonResourceServiceError, getCommonResourceServiceError } from "services/common-service/common-resource-service";
-export const loadProcess = (containerRequestUuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process> => {
- const containerRequest = await services.containerRequestService.get(containerRequestUuid);
- dispatch<any>(updateResources([containerRequest]));
+export const loadProcess =
+ (containerRequestUuid: string) =>
+ async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process | undefined> => {
+ let containerRequest: ContainerRequestResource | undefined = undefined;
+ try {
+ containerRequest = await services.containerRequestService.get(containerRequestUuid);
+ dispatch<any>(updateResources([containerRequest]));
+ } catch {
+ return undefined;
+ }
+
+ if (containerRequest.outputUuid) {
+ try {
+ const collection = await services.collectionService.get(containerRequest.outputUuid, false);
+ dispatch<any>(updateResources([collection]));
+ } catch {}
+ }
if (containerRequest.containerUuid) {
- const container = await services.containerService.get(containerRequest.containerUuid);
- dispatch<any>(updateResources([container]));
+ let container: ContainerResource | undefined = undefined;
+ try {
+ container = await services.containerService.get(containerRequest.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ } catch {}
+
+ try {
+ if (container && container.runtimeUserUuid) {
+ const runtimeUser = await services.userService.get(container.runtimeUserUuid, false);
+ dispatch<any>(updateResources([runtimeUser]));
+ }
+ } catch {}
+
return { containerRequest, container };
}
return { containerRequest };
};
-export const loadContainers = (filters: string, loadMounts: boolean = true) =>
+export const loadContainers =
+ (containerUuids: string[], loadMounts: boolean = true) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- let args: any = { filters };
+ let args: any = {
+ filters: new FilterBuilder().addIn("uuid", containerUuids).getFilters(),
+ limit: containerUuids.length,
+ };
if (!loadMounts) {
args.select = containerFieldsNoMounts;
}
"auth_uuid",
"command",
"container_image",
+ "cost",
"created_at",
"cwd",
"environment",
"scheduling_parameters",
"started_at",
"state",
+ "subrequests_cost",
"uuid",
-]
+];
-export const cancelRunningWorkflow = (uuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- try {
- const process = await services.containerRequestService.update(uuid, { priority: 0 });
- return process;
- } catch (e) {
- throw new Error('Could not cancel the process.');
+export const cancelRunningWorkflow = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { priority: 0 });
+ dispatch<any>(updateResources([process]));
+ if (process.containerUuid) {
+ const container = await services.containerService.get(process.containerUuid, false);
+ dispatch<any>(updateResources([container]));
}
- };
+ return process;
+ } catch (e) {
+ throw new Error("Could not cancel the process.");
+ }
+};
+
+export const resumeOnHoldWorkflow = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { priority: 500 });
+ dispatch<any>(updateResources([process]));
+ if (process.containerUuid) {
+ const container = await services.containerService.get(process.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ }
+ return process;
+ } catch (e) {
+ throw new Error("Could not resume the process.");
+ }
+};
+
+export const startWorkflow = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { state: ContainerRequestState.COMMITTED });
+ if (process) {
+ dispatch<any>(updateResources([process]));
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Process started", hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
+ } else {
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `Failed to start process`, kind: SnackbarKind.ERROR }));
+ }
+ } catch (e) {
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `Failed to start process`, kind: SnackbarKind.ERROR }));
+ }
+};
-export const reRunProcess = (processUuid: string, workflowUuid: string) =>
- (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+export const reRunProcess =
+ (processUuid: string, workflowUuid: string) => (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
const process = getResource<any>(processUuid)(getState().resources);
const workflows = getState().runProcessPanel.searchWorkflows;
const workflow = workflows.find(workflow => workflow.uuid === workflowUuid);
if (workflow && process) {
const mainWf = getWorkflow(process.mounts[MOUNT_PATH_CWL_WORKFLOW]);
- if (mainWf) { mainWf.inputs = getInputs(process); }
+ if (mainWf) {
+ mainWf.inputs = getInputs(process);
+ }
const stringifiedDefinition = JSON.stringify(process.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
const newWorkflow = { ...workflow, definition: stringifiedDefinition };
ram: process.runtimeConstraints.ram,
vcpus: process.runtimeConstraints.vcpus,
keep_cache_ram: process.runtimeConstraints.keep_cache_ram,
- acr_container_image: process.containerImage
+ acr_container_image: process.containerImage,
};
dispatch<any>(initialize(RUN_PROCESS_ADVANCED_FORM, advancedInitialData));
}
};
-const getInputs = (data: any) => {
- if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
+/*
+ * Fetches raw inputs from containerRequest mounts with fallback to properties
+ * Returns undefined if containerRequest not loaded
+ * Returns {} if inputs not found in mounts or props
+ */
+export const getRawInputs = (data: any): WorkflowInputsData | undefined => {
+ if (!data) {
+ return undefined;
+ }
+ const mountInput = data.mounts?.[MOUNT_PATH_CWL_INPUT]?.content;
+ const propsInput = data.properties?.cwl_input;
+ if (!mountInput && !propsInput) {
+ return {};
+ }
+ return mountInput || propsInput;
+};
+
+export const getInputs = (data: any): CommandInputParameter[] => {
+ // Definitions from mounts are needed so we return early if missing
+ if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) {
+ return [];
+ }
+ const content = getRawInputs(data) as any;
+ // Only escape if content is falsy to allow displaying definitions if no inputs are present
+ // (Don't check raw content length)
+ if (!content) {
+ return [];
+ }
+
const inputs = getWorkflowInputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
- return inputs ? inputs.map(
- (it: any) => (
- {
- type: it.type,
- id: it.id,
- label: it.label,
- default: data.mounts[MOUNT_PATH_CWL_INPUT].content[it.id],
- doc: it.doc
- }
- )
- ) : [];
+ return inputs
+ ? inputs.map((it: any) => ({
+ type: it.type,
+ id: it.id,
+ label: it.label,
+ default: content[it.id],
+ value: content[it.id.split("/").pop()] || [],
+ doc: it.doc,
+ }))
+ : [];
};
-export const openRemoveProcessDialog = (uuid: string) =>
- (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- dispatch(dialogActions.OPEN_DIALOG({
- id: REMOVE_PROCESS_DIALOG,
- data: {
- title: 'Remove process permanently',
- text: 'Are you sure you want to remove this process?',
- confirmButtonLabel: 'Remove',
- uuid
- }
+/*
+ * Fetches raw outputs from containerRequest properties
+ * Assumes containerRequest is loaded
+ */
+export const getRawOutputs = (data: any): CommandInputParameter[] | undefined => {
+ if (!data || !data.properties || !data.properties.cwl_output) {
+ return undefined;
+ }
+ return data.properties.cwl_output;
+};
+
+export type InputCollectionMount = {
+ path: string;
+ pdh: string;
+};
+
+export const getInputCollectionMounts = (data: any): InputCollectionMount[] => {
+ if (!data || !data.mounts) {
+ return [];
+ }
+ return Object.keys(data.mounts)
+ .map(key => ({
+ ...data.mounts[key],
+ path: key,
+ }))
+ .filter(mount => mount.kind === "collection" && mount.portable_data_hash && mount.path)
+ .map(mount => ({
+ path: mount.path,
+ pdh: mount.portable_data_hash,
}));
- };
+};
-export const REMOVE_PROCESS_DIALOG = 'removeProcessDialog';
+export const getOutputParameters = (data: any): CommandOutputParameter[] => {
+ if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) {
+ return [];
+ }
+ const outputs = getWorkflowOutputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
+ return outputs
+ ? outputs.map((it: any) => ({
+ type: it.type,
+ id: it.id,
+ label: it.label,
+ doc: it.doc,
+ }))
+ : [];
+};
-export const removeProcessPermanently = (uuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removing ...', kind: SnackbarKind.INFO }));
- await services.containerRequestService.delete(uuid);
- dispatch(projectPanelActions.REQUEST_ITEMS());
- dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removed.', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
+export const openRemoveProcessDialog =
+ (resource: ContextMenuResource, numOfProcesses: Number) => (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ const confirmationText =
+ numOfProcesses === 1
+ ? "Are you sure you want to remove this process?"
+ : `Are you sure you want to remove these ${numOfProcesses} processes?`;
+ const titleText = numOfProcesses === 1 ? "Remove process permanently" : "Remove processes permanently";
+
+ dispatch(
+ dialogActions.OPEN_DIALOG({
+ id: REMOVE_PROCESS_DIALOG,
+ data: {
+ title: titleText,
+ text: confirmationText,
+ confirmButtonLabel: "Remove",
+ uuid: resource.uuid,
+ resource,
+ },
+ })
+ );
};
+
+export const REMOVE_PROCESS_DIALOG = "removeProcessDialog";
+
+export const removeProcessPermanently = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ const resource = getState().dialog.removeProcessDialog.data.resource;
+ const checkedList = getState().multiselect.checkedList;
+
+ const uuidsToRemove: string[] = resource.fromContextMenu ? [resource.uuid] : selectedToArray(checkedList);
+
+ //if no items in checkedlist, default to normal context menu behavior
+ if (!uuidsToRemove.length) uuidsToRemove.push(uuid);
+
+ const processesToRemove = uuidsToRemove
+ .map(uuid => getResource(uuid)(getState().resources) as Resource)
+ .filter(resource => resource.kind === ResourceKind.PROCESS);
+
+ for (const process of processesToRemove) {
+ try {
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Removing ...", kind: SnackbarKind.INFO }));
+ await services.containerRequestService.delete(process.uuid, false);
+ dispatch(projectPanelActions.REQUEST_ITEMS());
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Removed.", hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
+ } catch (e) {
+ const error = getCommonResourceServiceError(e);
+ if (error === CommonResourceServiceError.PERMISSION_ERROR_FORBIDDEN) {
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: `Access denied`, hideDuration: 2000, kind: SnackbarKind.ERROR }));
+ } else {
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: `Deletion failed`, hideDuration: 2000, kind: SnackbarKind.ERROR }));
+ }
+ }
+ }
+};
projects / arvados-workbench2.git / blobdiff