//
// SPDX-License-Identifier: AGPL-3.0
-import { Dispatch } from "redux";
-import { RootState } from '~/store/store';
-import { ServiceRepository } from '~/services/services';
-import { updateResources } from '~/store/resources/resources-actions';
+import { Dispatch } from 'redux';
+import { RootState } from 'store/store';
+import { ServiceRepository } from 'services/services';
+import { updateResources } from 'store/resources/resources-actions';
import { Process } from './process';
-import { dialogActions } from '~/store/dialog/dialog-actions';
-import { snackbarActions, SnackbarKind } from '~/store/snackbar/snackbar-actions';
-import { projectPanelActions } from '~/store/project-panel/project-panel-action';
-import { navigateToRunProcess } from '~/store/navigation/navigation-action';
-import { goToStep, runProcessPanelActions } from '~/store/run-process-panel/run-process-panel-actions';
-import { getResource } from '~/store/resources/resources';
-import { initialize } from "redux-form";
-import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "~/views/run-process-panel/run-process-basic-form";
-import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "~/views/run-process-panel/run-process-advanced-form";
-import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from '~/models/process';
-import { getWorkflow, getWorkflowInputs } from "~/models/workflow";
-
-export const loadProcess = (containerRequestUuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process> => {
- const containerRequest = await services.containerRequestService.get(containerRequestUuid);
- dispatch<any>(updateResources([containerRequest]));
+import { dialogActions } from 'store/dialog/dialog-actions';
+import { snackbarActions, SnackbarKind } from 'store/snackbar/snackbar-actions';
+import { projectPanelActions } from 'store/project-panel/project-panel-action';
+import { navigateToRunProcess } from 'store/navigation/navigation-action';
+import { goToStep, runProcessPanelActions } from 'store/run-process-panel/run-process-panel-actions';
+import { getResource } from 'store/resources/resources';
+import { initialize } from 'redux-form';
+import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from 'views/run-process-panel/run-process-basic-form';
+import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from 'views/run-process-panel/run-process-advanced-form';
+import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from 'models/process';
+import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs, WorkflowInputsData } from 'models/workflow';
+import { ProjectResource } from 'models/project';
+import { UserResource } from 'models/user';
+import { CommandOutputParameter } from 'cwlts/mappings/v1.0/CommandOutputParameter';
+import { ContainerResource } from 'models/container';
+import { ContainerRequestResource, ContainerRequestState } from 'models/container-request';
+import { FilterBuilder } from 'services/api/filter-builder';
+
+export const loadProcess =
+ (containerRequestUuid: string) =>
+ async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process | undefined> => {
+ let containerRequest: ContainerRequestResource | undefined = undefined;
+ try {
+ containerRequest = await services.containerRequestService.get(containerRequestUuid);
+ dispatch<any>(updateResources([containerRequest]));
+ } catch {
+ return undefined;
+ }
+
+ if (containerRequest.outputUuid) {
+ try {
+ const collection = await services.collectionService.get(containerRequest.outputUuid, false);
+ dispatch<any>(updateResources([collection]));
+ } catch {}
+ }
if (containerRequest.containerUuid) {
- const container = await services.containerService.get(containerRequest.containerUuid);
- dispatch<any>(updateResources([container]));
+ let container: ContainerResource | undefined = undefined;
+ try {
+ container = await services.containerService.get(containerRequest.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ } catch {}
+
+ try {
+ if (container && container.runtimeUserUuid) {
+ const runtimeUser = await services.userService.get(container.runtimeUserUuid, false);
+ dispatch<any>(updateResources([runtimeUser]));
+ }
+ } catch {}
+
return { containerRequest, container };
}
return { containerRequest };
};
-export const loadContainers = (filters: string) =>
+export const loadContainers =
+ (containerUuids: string[], loadMounts: boolean = true) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- const { items } = await services.containerService.list({ filters });
+ let args: any = {
+ filters: new FilterBuilder().addIn('uuid', containerUuids).getFilters(),
+ limit: containerUuids.length,
+ };
+ if (!loadMounts) {
+ args.select = containerFieldsNoMounts;
+ }
+ const { items } = await services.containerService.list(args);
dispatch<any>(updateResources(items));
return items;
};
-export const cancelRunningWorkflow = (uuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- try {
- const process = await services.containerRequestService.update(uuid, { priority: 0 });
- return process;
- } catch (e) {
- throw new Error('Could not cancel the process.');
+// Until the api supports unselecting fields, we need a list of all other fields to omit mounts
+const containerFieldsNoMounts = [
+ 'auth_uuid',
+ 'command',
+ 'container_image',
+ 'cost',
+ 'created_at',
+ 'cwd',
+ 'environment',
+ 'etag',
+ 'exit_code',
+ 'finished_at',
+ 'gateway_address',
+ 'href',
+ 'interactive_session_started',
+ 'kind',
+ 'lock_count',
+ 'locked_by_uuid',
+ 'log',
+ 'modified_at',
+ 'modified_by_client_uuid',
+ 'modified_by_user_uuid',
+ 'output_path',
+ 'output_properties',
+ 'output_storage_classes',
+ 'output',
+ 'owner_uuid',
+ 'priority',
+ 'progress',
+ 'runtime_auth_scopes',
+ 'runtime_constraints',
+ 'runtime_status',
+ 'runtime_user_uuid',
+ 'scheduling_parameters',
+ 'started_at',
+ 'state',
+ 'uuid',
+];
+
+export const cancelRunningWorkflow = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { priority: 0 });
+ dispatch<any>(updateResources([process]));
+ if (process.containerUuid) {
+ const container = await services.containerService.get(process.containerUuid, false);
+ dispatch<any>(updateResources([container]));
}
- };
+ return process;
+ } catch (e) {
+ throw new Error('Could not cancel the process.');
+ }
+};
+
+export const resumeOnHoldWorkflow = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { priority: 500 });
+ dispatch<any>(updateResources([process]));
+ if (process.containerUuid) {
+ const container = await services.containerService.get(process.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ }
+ return process;
+ } catch (e) {
+ throw new Error('Could not resume the process.');
+ }
+};
-export const reRunProcess = (processUuid: string, workflowUuid: string) =>
- (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- const process = getResource<any>(processUuid)(getState().resources);
- const workflows = getState().runProcessPanel.searchWorkflows;
- const workflow = workflows.find(workflow => workflow.uuid === workflowUuid);
- if (workflow && process) {
- const mainWf = getWorkflow(process.mounts[MOUNT_PATH_CWL_WORKFLOW]);
- if (mainWf) { mainWf.inputs = getInputs(process); }
- const stringifiedDefinition = JSON.stringify(process.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
- const newWorkflow = { ...workflow, definition: stringifiedDefinition };
-
- const basicInitialData: RunProcessBasicFormData = { name: `Copy of: ${process.name}`, description: process.description };
- dispatch<any>(initialize(RUN_PROCESS_BASIC_FORM, basicInitialData));
-
- const advancedInitialData: RunProcessAdvancedFormData = {
- output: process.outputName,
- runtime: process.schedulingParameters.max_run_time,
- ram: process.runtimeConstraints.ram,
- vcpus: process.runtimeConstraints.vcpus,
- keep_cache_ram: process.runtimeConstraints.keep_cache_ram,
- acr_container_image: process.containerImage
- };
- dispatch<any>(initialize(RUN_PROCESS_ADVANCED_FORM, advancedInitialData));
-
- dispatch<any>(navigateToRunProcess);
- dispatch<any>(goToStep(1));
- dispatch(runProcessPanelActions.SET_STEP_CHANGED(true));
- dispatch(runProcessPanelActions.SET_SELECTED_WORKFLOW(newWorkflow));
+export const startWorkflow = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { state: ContainerRequestState.COMMITTED });
+ if (process) {
+ dispatch<any>(updateResources([process]));
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Process started', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
} else {
- dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `You can't re-run this process`, kind: SnackbarKind.ERROR }));
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `Failed to start process`, kind: SnackbarKind.ERROR }));
}
- };
+ } catch (e) {
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `Failed to start process`, kind: SnackbarKind.ERROR }));
+ }
+};
+
+export const reRunProcess = (processUuid: string, workflowUuid: string) => (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ const process = getResource<any>(processUuid)(getState().resources);
+ const workflows = getState().runProcessPanel.searchWorkflows;
+ const workflow = workflows.find((workflow) => workflow.uuid === workflowUuid);
+ if (workflow && process) {
+ const mainWf = getWorkflow(process.mounts[MOUNT_PATH_CWL_WORKFLOW]);
+ if (mainWf) {
+ mainWf.inputs = getInputs(process);
+ }
+ const stringifiedDefinition = JSON.stringify(process.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
+ const newWorkflow = { ...workflow, definition: stringifiedDefinition };
+
+ const owner = getResource<ProjectResource | UserResource>(workflow.ownerUuid)(getState().resources);
+ const basicInitialData: RunProcessBasicFormData = { name: `Copy of: ${process.name}`, description: process.description, owner };
+ dispatch<any>(initialize(RUN_PROCESS_BASIC_FORM, basicInitialData));
+
+ const advancedInitialData: RunProcessAdvancedFormData = {
+ output: process.outputName,
+ runtime: process.schedulingParameters.max_run_time,
+ ram: process.runtimeConstraints.ram,
+ vcpus: process.runtimeConstraints.vcpus,
+ keep_cache_ram: process.runtimeConstraints.keep_cache_ram,
+ acr_container_image: process.containerImage,
+ };
+ dispatch<any>(initialize(RUN_PROCESS_ADVANCED_FORM, advancedInitialData));
+
+ dispatch<any>(navigateToRunProcess);
+ dispatch<any>(goToStep(1));
+ dispatch(runProcessPanelActions.SET_STEP_CHANGED(true));
+ dispatch(runProcessPanelActions.SET_SELECTED_WORKFLOW(newWorkflow));
+ } else {
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `You can't re-run this process`, kind: SnackbarKind.ERROR }));
+ }
+};
+
+/*
+ * Fetches raw inputs from containerRequest mounts with fallback to properties
+ * Returns undefined if containerRequest not loaded
+ * Returns {} if inputs not found in mounts or props
+ */
+export const getRawInputs = (data: any): WorkflowInputsData | undefined => {
+ if (!data) {
+ return undefined;
+ }
+ const mountInput = data.mounts?.[MOUNT_PATH_CWL_INPUT]?.content;
+ const propsInput = data.properties?.cwl_input;
+ if (!mountInput && !propsInput) {
+ return {};
+ }
+ return mountInput || propsInput;
+};
+
+export const getInputs = (data: any): CommandInputParameter[] => {
+ // Definitions from mounts are needed so we return early if missing
+ if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) {
+ return [];
+ }
+ const content = getRawInputs(data) as any;
+ // Only escape if content is falsy to allow displaying definitions if no inputs are present
+ // (Don't check raw content length)
+ if (!content) {
+ return [];
+ }
-const getInputs = (data: any) => {
- if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
const inputs = getWorkflowInputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
- return inputs ? inputs.map(
- (it: any) => (
- {
- type: it.type,
- id: it.id,
- label: it.label,
- default: data.mounts[MOUNT_PATH_CWL_INPUT].content[it.id],
- doc: it.doc
- }
- )
- ) : [];
+ return inputs
+ ? inputs.map((it: any) => ({
+ type: it.type,
+ id: it.id,
+ label: it.label,
+ default: content[it.id],
+ value: content[it.id.split('/').pop()] || [],
+ doc: it.doc,
+ }))
+ : [];
+};
+
+/*
+ * Fetches raw outputs from containerRequest properties
+ * Assumes containerRequest is loaded
+ */
+export const getRawOutputs = (data: any): CommandInputParameter[] | undefined => {
+ if (!data || !data.properties || !data.properties.cwl_output) {
+ return undefined;
+ }
+ return data.properties.cwl_output;
+};
+
+export type InputCollectionMount = {
+ path: string;
+ pdh: string;
+};
+
+export const getInputCollectionMounts = (data: any): InputCollectionMount[] => {
+ if (!data || !data.mounts) {
+ return [];
+ }
+ return Object.keys(data.mounts)
+ .map((key) => ({
+ ...data.mounts[key],
+ path: key,
+ }))
+ .filter((mount) => mount.kind === 'collection' && mount.portable_data_hash && mount.path)
+ .map((mount) => ({
+ path: mount.path,
+ pdh: mount.portable_data_hash,
+ }));
};
-export const openRemoveProcessDialog = (uuid: string) =>
- (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- dispatch(dialogActions.OPEN_DIALOG({
+export const getOutputParameters = (data: any): CommandOutputParameter[] => {
+ if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) {
+ return [];
+ }
+ const outputs = getWorkflowOutputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
+ return outputs
+ ? outputs.map((it: any) => ({
+ type: it.type,
+ id: it.id,
+ label: it.label,
+ doc: it.doc,
+ }))
+ : [];
+};
+
+export const openRemoveProcessDialog = (uuid: string) => (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ dispatch(
+ dialogActions.OPEN_DIALOG({
id: REMOVE_PROCESS_DIALOG,
data: {
title: 'Remove process permanently',
text: 'Are you sure you want to remove this process?',
confirmButtonLabel: 'Remove',
- uuid
- }
- }));
- };
+ uuid,
+ },
+ })
+ );
+};
+
+export const openRemoveManyProcessesDialog = (list: Array<string>) => (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ dispatch(
+ dialogActions.OPEN_DIALOG({
+ id: REMOVE_MANY_PROCESSES_DIALOG,
+ data: {
+ title: 'Remove processes permanently',
+ text: `Are you sure you want to remove all ${list.length} processes?`,
+ confirmButtonLabel: 'Remove',
+ list,
+ },
+ })
+ );
+};
export const REMOVE_PROCESS_DIALOG = 'removeProcessDialog';
+export const REMOVE_MANY_PROCESSES_DIALOG = 'removeManyProcessesDialog';
-export const removeProcessPermanently = (uuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removing ...', kind: SnackbarKind.INFO }));
- await services.containerRequestService.delete(uuid);
- dispatch(projectPanelActions.REQUEST_ITEMS());
- dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removed.', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
- };
+export const removeProcessPermanently = (uuid: string) => async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removing ...', kind: SnackbarKind.INFO }));
+ await services.containerRequestService.delete(uuid);
+ dispatch(projectPanelActions.REQUEST_ITEMS());
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removed.', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
+};
projects / arvados-workbench2.git / blobdiff