// SPDX-License-Identifier: AGPL-3.0
import React, { ReactElement, useState } from 'react';
+import { Dispatch } from 'redux';
import {
StyleRulesCallback,
WithStyles,
TableRow,
TableCell,
Paper,
- Link,
Grid,
Chip,
+ CircularProgress,
} from '@material-ui/core';
import { ArvadosTheme } from 'common/custom-theme';
-import { CloseIcon, InfoIcon, ProcessIcon } from 'components/icon/icon';
+import { CloseIcon, ImageIcon, InputIcon, ImageOffIcon, OutputIcon, MaximizeIcon } from 'components/icon/icon';
import { MPVPanelProps } from 'components/multi-panel-view/multi-panel-view';
import {
BooleanCommandInputParameter,
import { AuthState } from 'store/auth/auth-reducer';
import mime from 'mime';
import { DefaultView } from 'components/default-view/default-view';
-
-type CssRules = 'card' | 'content' | 'title' | 'header' | 'avatar' | 'iconHeader' | 'tableWrapper' | 'tableRoot' | 'paramValue' | 'keepLink' | 'imagePreview' | 'valArray' | 'emptyValue';
+import { getNavUrl } from 'routes/routes';
+import { Link as RouterLink } from 'react-router-dom';
+import { Link as MuiLink } from '@material-ui/core';
+import { InputCollectionMount } from 'store/processes/processes-actions';
+import { connect } from 'react-redux';
+import { RootState } from 'store/store';
+import { ProcessOutputCollectionFiles } from './process-output-collection-files';
+import { Process } from 'store/processes/process';
+import { navigateTo } from 'store/navigation/navigation-action';
+import classNames from 'classnames';
+
+type CssRules =
+ | "card"
+ | "content"
+ | "title"
+ | "header"
+ | "avatar"
+ | "iconHeader"
+ | "tableWrapper"
+ | "tableRoot"
+ | "paramValue"
+ | "keepLink"
+ | "collectionLink"
+ | "imagePreview"
+ | "valArray"
+ | "secondaryVal"
+ | "emptyValue"
+ | "halfRow"
+ | "symmetricTabs"
+ | "imagePlaceholder"
+ | "rowWithPreview"
+ | "labelColumn";
const styles: StyleRulesCallback<CssRules> = (theme: ArvadosTheme) => ({
card: {
paddingTop: theme.spacing.unit * 0.5
},
content: {
+ height: `calc(100% - ${theme.spacing.unit * 7}px - ${theme.spacing.unit * 1.5}px)`,
padding: theme.spacing.unit * 1.0,
paddingTop: theme.spacing.unit * 0.5,
'&:last-child': {
paddingTop: theme.spacing.unit * 0.5
},
tableWrapper: {
+ height: `calc(100% - ${theme.spacing.unit * 6}px)`,
overflow: 'auto',
},
tableRoot: {
width: '100%',
+ '& thead th': {
+ verticalAlign: 'bottom',
+ paddingBottom: '10px',
+ },
+ '& td, & th': {
+ paddingRight: '25px',
+ }
},
paramValue: {
display: 'flex',
- alignItems: 'center',
+ alignItems: 'flex-start',
+ flexDirection: 'column',
},
keepLink: {
+ color: theme.palette.primary.main,
+ textDecoration: 'none',
+ overflowWrap: 'break-word',
cursor: 'pointer',
},
+ collectionLink: {
+ margin: '10px',
+ '& a': {
+ color: theme.palette.primary.main,
+ textDecoration: 'none',
+ overflowWrap: 'break-word',
+ cursor: 'pointer',
+ }
+ },
imagePreview: {
maxHeight: '15em',
- marginRight: theme.spacing.unit,
+ maxWidth: '15em',
+ marginBottom: theme.spacing.unit,
},
valArray: {
display: 'flex',
gap: '10px',
flexWrap: 'wrap',
+ '& span': {
+ display: 'inline',
+ }
+ },
+ secondaryVal: {
+ paddingLeft: '20px',
},
emptyValue: {
color: theme.customs.colors.grey500,
},
+ halfRow: {
+ '& td': {
+ borderBottom: 'none',
+ }
+ },
+ symmetricTabs: {
+ '& button': {
+ flexBasis: '0',
+ }
+ },
+ imagePlaceholder: {
+ width: '60px',
+ height: '60px',
+ display: 'flex',
+ alignItems: 'center',
+ justifyContent: 'center',
+ backgroundColor: '#cecece',
+ borderRadius: '10px',
+ },
+ rowWithPreview: {
+ verticalAlign: 'bottom',
+ },
+ labelColumn: {
+ minWidth: '120px',
+ },
});
+export enum ProcessIOCardType {
+ INPUT = 'Inputs',
+ OUTPUT = 'Outputs',
+}
export interface ProcessIOCardDataProps {
- label: string;
- params: ProcessIOParameter[];
+ process: Process;
+ label: ProcessIOCardType;
+ params?: ProcessIOParameter[];
raw?: any;
+ mounts?: InputCollectionMount[];
+ outputUuid?: string;
}
-type ProcessIOCardProps = ProcessIOCardDataProps & WithStyles<CssRules> & MPVPanelProps;
+export interface ProcessIOCardActionProps {
+ navigateTo: (uuid: string) => void;
+}
+
+const mapDispatchToProps = (dispatch: Dispatch): ProcessIOCardActionProps => ({
+ navigateTo: (uuid) => dispatch<any>(navigateTo(uuid)),
+});
+
+type ProcessIOCardProps = ProcessIOCardDataProps & ProcessIOCardActionProps & WithStyles<CssRules> & MPVPanelProps;
-export const ProcessIOCard = withStyles(styles)(
- ({ classes, label, params, raw, doHidePanel, panelName }: ProcessIOCardProps) => {
- const [tabState, setTabState] = useState(0);
- const handleChange = (event: React.MouseEvent<HTMLElement>, value: number) => {
- setTabState(value);
+export const ProcessIOCard = withStyles(styles)(connect(null, mapDispatchToProps)(
+ ({ classes, label, params, raw, mounts, outputUuid, doHidePanel, doMaximizePanel, panelMaximized, panelName, process, navigateTo }: ProcessIOCardProps) => {
+ const [mainProcTabState, setMainProcTabState] = useState(0);
+ const handleMainProcTabChange = (event: React.MouseEvent<HTMLElement>, value: number) => {
+ setMainProcTabState(value);
}
+ const [showImagePreview, setShowImagePreview] = useState(false);
+
+ const PanelIcon = label === ProcessIOCardType.INPUT ? InputIcon : OutputIcon;
+ const mainProcess = !process.containerRequest.requestingContainerUuid;
+
+ const loading = raw === undefined || params === undefined;
+ const hasRaw = !!(raw && Object.keys(raw).length > 0);
+ const hasParams = !!(params && params.length > 0);
+
return <Card className={classes.card} data-cy="process-io-card">
<CardHeader
className={classes.header}
content: classes.title,
avatar: classes.avatar,
}}
- avatar={<ProcessIcon className={classes.iconHeader} />}
+ avatar={<PanelIcon className={classes.iconHeader} />}
title={
<Typography noWrap variant='h6' color='inherit'>
{label}
}
action={
<div>
+ { mainProcess && <Tooltip title={"Toggle Image Preview"} disableFocusListener>
+ <IconButton data-cy="io-preview-image-toggle" onClick={() =>{setShowImagePreview(!showImagePreview)}}>{showImagePreview ? <ImageIcon /> : <ImageOffIcon />}</IconButton>
+ </Tooltip> }
+ { doMaximizePanel && !panelMaximized &&
+ <Tooltip title={`Maximize ${panelName || 'panel'}`} disableFocusListener>
+ <IconButton onClick={doMaximizePanel}><MaximizeIcon /></IconButton>
+ </Tooltip> }
{ doHidePanel &&
<Tooltip title={`Close ${panelName || 'panel'}`} disableFocusListener>
<IconButton onClick={doHidePanel}><CloseIcon /></IconButton>
</div>
} />
<CardContent className={classes.content}>
- {params.length ?
- <div>
- <Tabs value={tabState} onChange={handleChange} variant="fullWidth">
- <Tab label="Preview" />
- <Tab label="Raw" />
- </Tabs>
- {tabState === 0 && <div className={classes.tableWrapper}>
- <ProcessIOPreview data={params} />
- </div>}
- {tabState === 1 && <div className={classes.tableWrapper}>
- <ProcessIORaw data={raw || params} />
- </div>}
- </div> : <Grid container item alignItems='center' justify='center'>
- <DefaultView messages={["No parameters found"]} icon={InfoIcon} />
- </Grid>}
+ {mainProcess ?
+ (<>
+ {/* raw is undefined until params are loaded */}
+ {loading && <Grid container item alignItems='center' justify='center'>
+ <CircularProgress />
+ </Grid>}
+ {/* Once loaded, either raw or params may still be empty
+ * Raw when all params are empty
+ * Params when raw is provided by containerRequest properties but workflow mount is absent for preview
+ */}
+ {(!loading && (hasRaw || hasParams)) &&
+ <>
+ <Tabs value={mainProcTabState} onChange={handleMainProcTabChange} variant="fullWidth" className={classes.symmetricTabs}>
+ {/* params will be empty on processes without workflow definitions in mounts, so we only show raw */}
+ {hasParams && <Tab label="Parameters" />}
+ <Tab label="JSON" />
+ </Tabs>
+ {(mainProcTabState === 0 && params && hasParams) && <div className={classes.tableWrapper}>
+ <ProcessIOPreview data={params} showImagePreview={showImagePreview} />
+ </div>}
+ {(mainProcTabState === 1 || !hasParams) && <div className={classes.tableWrapper}>
+ <ProcessIORaw data={raw} />
+ </div>}
+ </>}
+ {!loading && !hasRaw && !hasParams && <Grid container item alignItems='center' justify='center'>
+ <DefaultView messages={["No parameters found"]} />
+ </Grid>}
+ </>) :
+ // Subprocess
+ (<>
+ {((mounts && mounts.length) || outputUuid) ?
+ <>
+ <Tabs value={0} variant="fullWidth" className={classes.symmetricTabs}>
+ {label === ProcessIOCardType.INPUT && <Tab label="Collections" />}
+ {label === ProcessIOCardType.OUTPUT && <Tab label="Collection" />}
+ </Tabs>
+ <div className={classes.tableWrapper}>
+ {label === ProcessIOCardType.INPUT && <ProcessInputMounts mounts={mounts || []} />}
+ {label === ProcessIOCardType.OUTPUT && <>
+ {outputUuid && <Typography className={classes.collectionLink}>
+ Output Collection: <MuiLink className={classes.keepLink} onClick={() => {navigateTo(outputUuid || "")}}>
+ {outputUuid}
+ </MuiLink></Typography>}
+ <ProcessOutputCollectionFiles isWritable={false} currentItemUuid={outputUuid} />
+ </>}
+ </div>
+ </> :
+ <Grid container item alignItems='center' justify='center'>
+ <DefaultView messages={["No collection(s) found"]} />
+ </Grid>
+ }
+ </>)
+ }
</CardContent>
</Card>;
}
-);
+));
export type ProcessIOValue = {
display: ReactElement<any, any>;
- nav?: string;
imageUrl?: string;
+ collection?: ReactElement<any, any>;
+ secondary?: boolean;
}
export type ProcessIOParameter = {
id: string;
- doc: string;
+ label: string;
value: ProcessIOValue[];
}
interface ProcessIOPreviewDataProps {
data: ProcessIOParameter[];
+ showImagePreview: boolean;
}
type ProcessIOPreviewProps = ProcessIOPreviewDataProps & WithStyles<CssRules>;
const ProcessIOPreview = withStyles(styles)(
- ({ classes, data }: ProcessIOPreviewProps) =>
- <Table className={classes.tableRoot} aria-label="simple table">
+ ({ classes, data, showImagePreview }: ProcessIOPreviewProps) => {
+ const showLabel = data.some((param: ProcessIOParameter) => param.label);
+ return <Table className={classes.tableRoot} aria-label="Process IO Preview">
<TableHead>
<TableRow>
- <TableCell>Label</TableCell>
- <TableCell>Description</TableCell>
+ <TableCell>Name</TableCell>
+ {showLabel && <TableCell className={classes.labelColumn}>Label</TableCell>}
<TableCell>Value</TableCell>
+ <TableCell>Collection</TableCell>
</TableRow>
</TableHead>
<TableBody>
{data.map((param: ProcessIOParameter) => {
- return <TableRow key={param.id}>
- <TableCell component="th" scope="row">
- {param.id}
- </TableCell>
- <TableCell>{param.doc}</TableCell>
- <TableCell>{param.value.map(val => (
- <Typography className={classes.paramValue}>
- {val.imageUrl ? <img className={classes.imagePreview} src={val.imageUrl} alt="Inline Preview" /> : ""}
- {val.nav ?
- <Link className={classes.keepLink} onClick={() => handleClick(val.nav)}>{val.display}</Link>
- : <span className={classes.valArray}>
- {val.display}
- </span>
- }
- </Typography>
- ))}</TableCell>
- </TableRow>;
+ const firstVal = param.value.length > 0 ? param.value[0] : undefined;
+ const rest = param.value.slice(1);
+ const rowClass = rest.length > 0 ? classes.halfRow : undefined;
+
+ return <>
+ <TableRow className={rowClass} data-cy="process-io-param">
+ <TableCell>
+ {param.id}
+ </TableCell>
+ {showLabel && <TableCell >{param.label}</TableCell>}
+ <TableCell>
+ {firstVal && <ProcessValuePreview value={firstVal} showImagePreview={showImagePreview} />}
+ </TableCell>
+ <TableCell className={firstVal?.imageUrl ? classes.rowWithPreview : undefined}>
+ <Typography className={classes.paramValue}>
+ {firstVal?.collection}
+ </Typography>
+ </TableCell>
+ </TableRow>
+ {rest.map((val, i) => (
+ <TableRow className={(i < rest.length-1) ? rowClass : undefined}>
+ <TableCell />
+ {showLabel && <TableCell />}
+ <TableCell>
+ <ProcessValuePreview value={val} showImagePreview={showImagePreview} />
+ </TableCell>
+ <TableCell className={firstVal?.imageUrl ? classes.rowWithPreview : undefined}>
+ <Typography className={classes.paramValue}>
+ {val.collection}
+ </Typography>
+ </TableCell>
+ </TableRow>
+ ))}
+ </>;
})}
</TableBody>
- </Table>
-);
+ </Table>;
+});
-const handleClick = (url) => {
- window.open(url, '_blank');
+interface ProcessValuePreviewProps {
+ value: ProcessIOValue;
+ showImagePreview: boolean;
+}
+
+const ProcessValuePreview = withStyles(styles)(
+ ({value, showImagePreview, classes}: ProcessValuePreviewProps & WithStyles<CssRules>) =>
+ <Typography className={classes.paramValue}>
+ {value.imageUrl && showImagePreview ? <img className={classes.imagePreview} src={value.imageUrl} alt="Inline Preview" /> : ""}
+ {value.imageUrl && !showImagePreview ? <ImagePlaceholder /> : ""}
+ <span className={classNames(classes.valArray, value.secondary && classes.secondaryVal)}>
+ {value.display}
+ </span>
+ </Typography>
+)
+
+interface ProcessIORawDataProps {
+ data: ProcessIOParameter[];
}
const ProcessIORaw = withStyles(styles)(
- ({ data }: ProcessIOPreviewProps) =>
+ ({ data }: ProcessIORawDataProps) =>
<Paper elevation={0}>
<pre>
{JSON.stringify(data, null, 2)}
</Paper>
);
+interface ProcessInputMountsDataProps {
+ mounts: InputCollectionMount[];
+}
+
+type ProcessInputMountsProps = ProcessInputMountsDataProps & WithStyles<CssRules>;
+
+const ProcessInputMounts = withStyles(styles)(connect((state: RootState) => ({
+ auth: state.auth,
+}))(({ mounts, classes, auth }: ProcessInputMountsProps & { auth: AuthState }) => (
+ <Table className={classes.tableRoot} aria-label="Process Input Mounts">
+ <TableHead>
+ <TableRow>
+ <TableCell>Path</TableCell>
+ <TableCell>Portable Data Hash</TableCell>
+ </TableRow>
+ </TableHead>
+ <TableBody>
+ {mounts.map(mount => (
+ <TableRow key={mount.path}>
+ <TableCell><pre>{mount.path}</pre></TableCell>
+ <TableCell>
+ <RouterLink to={getNavUrl(mount.pdh, auth)} className={classes.keepLink}>{mount.pdh}</RouterLink>
+ </TableCell>
+ </TableRow>
+ ))}
+ </TableBody>
+ </Table>
+)));
+
type FileWithSecondaryFiles = {
secondaryFiles: File[];
}
...(mainFile && !(Array.isArray(mainFile) && mainFile.length === 0) ? [mainFile] : []),
...secondaryFiles
];
+ const mainFilePdhUrl = mainFile ? getResourcePdhUrl(mainFile, pdh) : "";
return files.length ?
- files.map(file => fileToProcessIOValue(file, auth, pdh)) :
+ files.map((file, i) => fileToProcessIOValue(file, (i > 0), auth, pdh, (i > 0 ? mainFilePdhUrl : ""))) :
[{display: <EmptyValue />}];
case isPrimitiveOfType(input, CWLType.DIRECTORY):
[{display: <EmptyValue />}];
case isArrayOfType(input, CWLType.FILE):
- const fileArrayMainFile = ((input as FileArrayCommandInputParameter).value || []);
- const fileArraySecondaryFiles = fileArrayMainFile.map((file) => (
- ((file as unknown) as FileWithSecondaryFiles)?.secondaryFiles || []
- )).reduce((acc: File[], params: File[]) => (acc.concat(params)), []);
-
- const fileArrayFiles = [
- ...fileArrayMainFile,
- ...fileArraySecondaryFiles
- ];
-
- return fileArrayFiles.length ?
- fileArrayFiles.map(file => fileToProcessIOValue(file, auth, pdh)) :
+ const fileArrayMainFiles = ((input as FileArrayCommandInputParameter).value || []);
+ const firstMainFilePdh = fileArrayMainFiles.length > 0 ? getResourcePdhUrl(fileArrayMainFiles[0], pdh) : "";
+
+ // Convert each main file into separate arrays of ProcessIOValue to preserve secondaryFile grouping
+ const fileArrayValues = fileArrayMainFiles.map((mainFile: File, i): ProcessIOValue[] => {
+ const secondaryFiles = ((mainFile as unknown) as FileWithSecondaryFiles)?.secondaryFiles || [];
+ return [
+ // Pass firstMainFilePdh to secondary files and every main file besides the first to hide pdh if equal
+ fileToProcessIOValue(mainFile, false, auth, pdh, i > 0 ? firstMainFilePdh : ""),
+ ...(secondaryFiles.map(file => fileToProcessIOValue(file, true, auth, pdh, firstMainFilePdh)))
+ ];
+ // Reduce each mainFile/secondaryFile group into single array preserving ordering
+ }).reduce((acc: ProcessIOValue[], mainFile: ProcessIOValue[]) => (acc.concat(mainFile)), []);
+
+ return fileArrayValues.length ?
+ fileArrayValues :
[{display: <EmptyValue />}];
case isArrayOfType(input, CWLType.DIRECTORY):
}
};
+/*
+ * @returns keep url without keep: prefix
+ */
const getKeepUrl = (file: File | Directory, pdh?: string): string => {
const isKeepUrl = file.location?.startsWith('keep:') || false;
- const keepUrl = isKeepUrl ? file.location : pdh ? `keep:${pdh}/${file.location}` : file.location;
+ const keepUrl = isKeepUrl ?
+ file.location?.replace('keep:', '') :
+ pdh ? `${pdh}/${file.location}` : file.location;
return keepUrl || '';
};
-const getNavUrl = (auth: AuthState, file: File | Directory, pdh?: string): string => {
- let keepUrl = getKeepUrl(file, pdh).replace('keep:', '');
+interface KeepUrlProps {
+ auth: AuthState;
+ res: File | Directory;
+ pdh?: string;
+}
+
+const getResourcePdhUrl = (res: File | Directory, pdh?: string): string => {
+ const keepUrl = getKeepUrl(res, pdh);
+ return keepUrl ? keepUrl.split('/').slice(0, 1)[0] : '';
+};
+
+const KeepUrlBase = withStyles(styles)(({auth, res, pdh, classes}: KeepUrlProps & WithStyles<CssRules>) => {
+ const pdhUrl = getResourcePdhUrl(res, pdh);
+ // Passing a pdh always returns a relative wb2 collection url
+ const pdhWbPath = getNavUrl(pdhUrl, auth);
+ return pdhUrl && pdhWbPath ?
+ <Tooltip title={"View collection in Workbench"}><RouterLink to={pdhWbPath} className={classes.keepLink}>{pdhUrl}</RouterLink></Tooltip> :
+ <></>;
+});
+
+const KeepUrlPath = withStyles(styles)(({auth, res, pdh, classes}: KeepUrlProps & WithStyles<CssRules>) => {
+ const keepUrl = getKeepUrl(res, pdh);
+ const keepUrlParts = keepUrl ? keepUrl.split('/') : [];
+ const keepUrlPath = keepUrlParts.length > 1 ? keepUrlParts.slice(1).join('/') : '';
+
+ const keepUrlPathNav = getKeepNavUrl(auth, res, pdh);
+ return keepUrlPath && keepUrlPathNav ?
+ <Tooltip title={"View in keep-web"}><a className={classes.keepLink} href={keepUrlPathNav} target="_blank" rel="noopener noreferrer">{keepUrlPath}</a></Tooltip> :
+ // Show No value for root collection io that lacks path part
+ <EmptyValue />;
+});
+
+const getKeepNavUrl = (auth: AuthState, file: File | Directory, pdh?: string): string => {
+ let keepUrl = getKeepUrl(file, pdh);
return (getInlineFileUrl(`${auth.config.keepWebServiceUrl}/c=${keepUrl}?api_token=${auth.apiToken}`, auth.config.keepWebServiceUrl, auth.config.keepWebInlineServiceUrl));
};
const getImageUrl = (auth: AuthState, file: File, pdh?: string): string => {
- const keepUrl = getKeepUrl(file, pdh).replace('keep:', '');
+ const keepUrl = getKeepUrl(file, pdh);
return getInlineFileUrl(`${auth.config.keepWebServiceUrl}/c=${keepUrl}?api_token=${auth.apiToken}`, auth.config.keepWebServiceUrl, auth.config.keepWebInlineServiceUrl);
};
const directoryToProcessIOValue = (directory: Directory, auth: AuthState, pdh?: string): ProcessIOValue => {
const normalizedDirectory = normalizeDirectoryLocation(directory);
return {
- display: <>{getKeepUrl(normalizedDirectory, pdh)}</>,
- nav: getNavUrl(auth, normalizedDirectory, pdh),
+ display: <KeepUrlPath auth={auth} res={normalizedDirectory} pdh={pdh}/>,
+ collection: <KeepUrlBase auth={auth} res={normalizedDirectory} pdh={pdh}/>,
};
};
-const fileToProcessIOValue = (file: File, auth: AuthState, pdh?: string): ProcessIOValue => ({
- display: <>{getKeepUrl(file, pdh)}</>,
- nav: getNavUrl(auth, file, pdh),
- imageUrl: isFileImage(file.basename) ? getImageUrl(auth, file, pdh) : undefined,
-});
+const fileToProcessIOValue = (file: File, secondary: boolean, auth: AuthState, pdh: string | undefined, mainFilePdh: string): ProcessIOValue => {
+ const resourcePdh = getResourcePdhUrl(file, pdh);
+ return {
+ display: <KeepUrlPath auth={auth} res={file} pdh={pdh}/>,
+ secondary,
+ imageUrl: isFileImage(file.basename) ? getImageUrl(auth, file, pdh) : undefined,
+ collection: (resourcePdh !== mainFilePdh) ? <KeepUrlBase auth={auth} res={file} pdh={pdh}/> : <></>,
+ }
+};
const EmptyValue = withStyles(styles)(
({classes}: WithStyles<CssRules>) => <span className={classes.emptyValue}>No value</span>
);
+
+const ImagePlaceholder = withStyles(styles)(
+ ({classes}: WithStyles<CssRules>) => <span className={classes.imagePlaceholder}><ImageIcon /></span>
+);
projects / arvados-workbench2.git / blobdiff