import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "views/run-process-panel/run-process-basic-form";
import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "views/run-process-panel/run-process-advanced-form";
import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from 'models/process';
-import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs } from "models/workflow";
+import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs, WorkflowInputsData } from "models/workflow";
import { ProjectResource } from "models/project";
import { UserResource } from "models/user";
import { CommandOutputParameter } from "cwlts/mappings/v1.0/CommandOutputParameter";
+import { ContainerResource } from "models/container";
+import { ContainerRequestResource, ContainerRequestState } from "models/container-request";
+import { FilterBuilder } from "services/api/filter-builder";
export const loadProcess = (containerRequestUuid: string) =>
- async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process> => {
- const containerRequest = await services.containerRequestService.get(containerRequestUuid);
- dispatch<any>(updateResources([containerRequest]));
+ async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process | undefined> => {
+ let containerRequest: ContainerRequestResource | undefined = undefined;
+ try {
+ containerRequest = await services.containerRequestService.get(containerRequestUuid);
+ dispatch<any>(updateResources([containerRequest]));
+ } catch {
+ return undefined;
+ }
if (containerRequest.outputUuid) {
- const collection = await services.collectionService.get(containerRequest.outputUuid);
- dispatch<any>(updateResources([collection]));
+ try {
+ const collection = await services.collectionService.get(containerRequest.outputUuid, false);
+ dispatch<any>(updateResources([collection]));
+ } catch {}
}
if (containerRequest.containerUuid) {
- const container = await services.containerService.get(containerRequest.containerUuid);
- dispatch<any>(updateResources([container]));
+ let container: ContainerResource | undefined = undefined;
+ try {
+ container = await services.containerService.get(containerRequest.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ } catch {}
+
+ try{
+ if (container && container.runtimeUserUuid) {
+ const runtimeUser = await services.userService.get(container.runtimeUserUuid, false);
+ dispatch<any>(updateResources([runtimeUser]));
+ }
+ } catch {}
+
return { containerRequest, container };
}
return { containerRequest };
};
-export const loadContainers = (filters: string) =>
+export const loadContainers = (containerUuids: string[], loadMounts: boolean = true) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
- const { items } = await services.containerService.list({ filters });
+ let args: any = {
+ filters: new FilterBuilder().addIn('uuid', containerUuids).getFilters(),
+ limit: containerUuids.length,
+ };
+ if (!loadMounts) {
+ args.select = containerFieldsNoMounts;
+ }
+ const { items } = await services.containerService.list(args);
dispatch<any>(updateResources(items));
return items;
};
+// Until the api supports unselecting fields, we need a list of all other fields to omit mounts
+const containerFieldsNoMounts = [
+ "auth_uuid",
+ "command",
+ "container_image",
+ "cost",
+ "created_at",
+ "cwd",
+ "environment",
+ "etag",
+ "exit_code",
+ "finished_at",
+ "gateway_address",
+ "href",
+ "interactive_session_started",
+ "kind",
+ "lock_count",
+ "locked_by_uuid",
+ "log",
+ "modified_at",
+ "modified_by_client_uuid",
+ "modified_by_user_uuid",
+ "output_path",
+ "output_properties",
+ "output_storage_classes",
+ "output",
+ "owner_uuid",
+ "priority",
+ "progress",
+ "runtime_auth_scopes",
+ "runtime_constraints",
+ "runtime_status",
+ "runtime_user_uuid",
+ "scheduling_parameters",
+ "started_at",
+ "state",
+ "uuid",
+]
+
export const cancelRunningWorkflow = (uuid: string) =>
async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
try {
const process = await services.containerRequestService.update(uuid, { priority: 0 });
+ dispatch<any>(updateResources([process]));
+ if (process.containerUuid) {
+ const container = await services.containerService.get(process.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ }
return process;
} catch (e) {
throw new Error('Could not cancel the process.');
}
};
+export const resumeOnHoldWorkflow = (uuid: string) =>
+ async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { priority: 500 });
+ dispatch<any>(updateResources([process]));
+ if (process.containerUuid) {
+ const container = await services.containerService.get(process.containerUuid, false);
+ dispatch<any>(updateResources([container]));
+ }
+ return process;
+ } catch (e) {
+ throw new Error('Could not resume the process.');
+ }
+ };
+
+export const startWorkflow = (uuid: string) =>
+ async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
+ try {
+ const process = await services.containerRequestService.update(uuid, { state: ContainerRequestState.COMMITTED });
+ if (process) {
+ dispatch<any>(updateResources([process]));
+ dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Process started', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
+ } else {
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `Failed to start process`, kind: SnackbarKind.ERROR }));
+ }
+ } catch (e) {
+ dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `Failed to start process`, kind: SnackbarKind.ERROR }));
+ }
+ };
+
export const reRunProcess = (processUuid: string, workflowUuid: string) =>
(dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
const process = getResource<any>(processUuid)(getState().resources);
}
};
+/*
+ * Fetches raw inputs from containerRequest mounts with fallback to properties
+ * Returns undefined if containerRequest not loaded
+ * Returns {} if inputs not found in mounts or props
+ */
+export const getRawInputs = (data: any): WorkflowInputsData | undefined => {
+ if (!data) { return undefined; }
+ const mountInput = data.mounts?.[MOUNT_PATH_CWL_INPUT]?.content;
+ const propsInput = data.properties?.cwl_input;
+ if (!mountInput && !propsInput) { return {}; }
+ return (mountInput || propsInput);
+}
+
export const getInputs = (data: any): CommandInputParameter[] => {
+ // Definitions from mounts are needed so we return early if missing
if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
+ const content = getRawInputs(data) as any;
+ // Only escape if content is falsy to allow displaying definitions if no inputs are present
+ // (Don't check raw content length)
+ if (!content) { return []; }
+
const inputs = getWorkflowInputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
return inputs ? inputs.map(
(it: any) => (
type: it.type,
id: it.id,
label: it.label,
- default: data.mounts[MOUNT_PATH_CWL_INPUT].content[it.id],
- value: data.mounts[MOUNT_PATH_CWL_INPUT].content[it.id.split('/').pop()] || [],
+ default: content[it.id],
+ value: content[it.id.split('/').pop()] || [],
doc: it.doc
}
)
) : [];
};
+/*
+ * Fetches raw outputs from containerRequest properties
+ * Assumes containerRequest is loaded
+ */
+export const getRawOutputs = (data: any): CommandInputParameter[] | undefined => {
+ if (!data || !data.properties || !data.properties.cwl_output) { return undefined; }
+ return (data.properties.cwl_output);
+}
+
export type InputCollectionMount = {
path: string;
pdh: string;
projects / arvados-workbench2.git / blobdiff