src/views/process-panel/process-io-card.tsx

   1 // Copyright (C) The Arvados Authors. All rights reserved.
   2 //
   3 // SPDX-License-Identifier: AGPL-3.0
   4
   5 import React, { ReactElement, useState } from 'react';
   6 import { Dispatch } from 'redux';
   7 import {
   8     StyleRulesCallback,
   9     WithStyles,
  10     withStyles,
  11     Card,
  12     CardHeader,
  13     IconButton,
  14     CardContent,
  15     Tooltip,
  16     Typography,
  17     Tabs,
  18     Tab,
  19     Table,
  20     TableHead,
  21     TableBody,
  22     TableRow,
  23     TableCell,
  24     Paper,
  25     Grid,
  26     Chip,
  27     CircularProgress,
  28 } from '@material-ui/core';
  29 import { ArvadosTheme } from 'common/custom-theme';
  30 import {
  31     CloseIcon,
  32     ImageIcon,
  33     InputIcon,
  34     ImageOffIcon,
  35     OutputIcon,
  36     MaximizeIcon,
  37     UnMaximizeIcon,
  38     InfoIcon
  39 } from 'components/icon/icon';
  40 import { MPVPanelProps } from 'components/multi-panel-view/multi-panel-view';
  41 import {
  42   BooleanCommandInputParameter,
  43   CommandInputParameter,
  44   CWLType,
  45   Directory,
  46   DirectoryArrayCommandInputParameter,
  47   DirectoryCommandInputParameter,
  48   EnumCommandInputParameter,
  49   FileArrayCommandInputParameter,
  50   FileCommandInputParameter,
  51   FloatArrayCommandInputParameter,
  52   FloatCommandInputParameter,
  53   IntArrayCommandInputParameter,
  54   IntCommandInputParameter,
  55   isArrayOfType,
  56   isPrimitiveOfType,
  57   StringArrayCommandInputParameter,
  58   StringCommandInputParameter,
  59 } from "models/workflow";
  60 import { CommandOutputParameter } from 'cwlts/mappings/v1.0/CommandOutputParameter';
  61 import { File } from 'models/workflow';
  62 import { getInlineFileUrl } from 'views-components/context-menu/actions/helpers';
  63 import { AuthState } from 'store/auth/auth-reducer';
  64 import mime from 'mime';
  65 import { DefaultView } from 'components/default-view/default-view';
  66 import { getNavUrl } from 'routes/routes';
  67 import { Link as RouterLink } from 'react-router-dom';
  68 import { Link as MuiLink } from '@material-ui/core';
  69 import { InputCollectionMount } from 'store/processes/processes-actions';
  70 import { connect } from 'react-redux';
  71 import { RootState } from 'store/store';
  72 import { ProcessOutputCollectionFiles } from './process-output-collection-files';
  73 import { Process } from 'store/processes/process';
  74 import { navigateTo } from 'store/navigation/navigation-action';
  75 import classNames from 'classnames';
  76 import { DefaultCodeSnippet } from 'components/default-code-snippet/default-code-snippet';
  77 import { KEEP_URL_REGEX } from 'models/resource';
  78
  79 type CssRules =
  80   | "card"
  81   | "content"
  82   | "title"
  83   | "header"
  84   | "avatar"
  85   | "iconHeader"
  86   | "tableWrapper"
  87   | "tableRoot"
  88   | "paramValue"
  89   | "keepLink"
  90   | "collectionLink"
  91   | "imagePreview"
  92   | "valArray"
  93   | "secondaryVal"
  94   | "secondaryRow"
  95   | "emptyValue"
  96   | "noBorderRow"
  97   | "symmetricTabs"
  98   | "imagePlaceholder"
  99   | "rowWithPreview"
 100   | "labelColumn";
 101
 102 const styles: StyleRulesCallback<CssRules> = (theme: ArvadosTheme) => ({
 103     card: {
 104         height: '100%'
 105     },
 106     header: {
 107         paddingTop: theme.spacing.unit,
 108         paddingBottom: 0,
 109     },
 110     iconHeader: {
 111         fontSize: '1.875rem',
 112         color: theme.customs.colors.green700,
 113     },
 114     avatar: {
 115         alignSelf: 'flex-start',
 116         paddingTop: theme.spacing.unit * 0.5
 117     },
 118     content: {
 119         height: `calc(100% - ${theme.spacing.unit * 7}px - ${theme.spacing.unit * 1.5}px)`,
 120         padding: theme.spacing.unit * 1.0,
 121         paddingTop: 0,
 122         '&:last-child': {
 123             paddingBottom: theme.spacing.unit * 1,
 124         }
 125     },
 126     title: {
 127         overflow: 'hidden',
 128         paddingTop: theme.spacing.unit * 0.5
 129     },
 130     tableWrapper: {
 131         height: 'auto',
 132         maxHeight: `calc(100% - ${theme.spacing.unit * 4.5}px)`,
 133         overflow: 'auto',
 134     },
 135     tableRoot: {
 136         width: '100%',
 137         '& thead th': {
 138             verticalAlign: 'bottom',
 139             paddingBottom: '10px',
 140         },
 141         '& td, & th': {
 142             paddingRight: '25px',
 143         }
 144     },
 145     paramValue: {
 146         display: 'flex',
 147         alignItems: 'flex-start',
 148         flexDirection: 'column',
 149     },
 150     keepLink: {
 151         color: theme.palette.primary.main,
 152         textDecoration: 'none',
 153         overflowWrap: 'break-word',
 154         cursor: 'pointer',
 155     },
 156     collectionLink: {
 157         margin: '10px',
 158         '& a': {
 159             color: theme.palette.primary.main,
 160             textDecoration: 'none',
 161             overflowWrap: 'break-word',
 162             cursor: 'pointer',
 163         }
 164     },
 165     imagePreview: {
 166         maxHeight: '15em',
 167         maxWidth: '15em',
 168         marginBottom: theme.spacing.unit,
 169     },
 170     valArray: {
 171         display: 'flex',
 172         gap: '10px',
 173         flexWrap: 'wrap',
 174         '& span': {
 175             display: 'inline',
 176         }
 177     },
 178     secondaryVal: {
 179         paddingLeft: '20px',
 180     },
 181     secondaryRow: {
 182         height: '29px',
 183         verticalAlign: 'top',
 184         position: 'relative',
 185         top: '-9px',
 186     },
 187     emptyValue: {
 188         color: theme.customs.colors.grey500,
 189     },
 190     noBorderRow: {
 191         '& td': {
 192             borderBottom: 'none',
 193         }
 194     },
 195     symmetricTabs: {
 196         '& button': {
 197             flexBasis: '0',
 198         }
 199     },
 200     imagePlaceholder: {
 201         width: '60px',
 202         height: '60px',
 203         display: 'flex',
 204         alignItems: 'center',
 205         justifyContent: 'center',
 206         backgroundColor: '#cecece',
 207         borderRadius: '10px',
 208     },
 209     rowWithPreview: {
 210         verticalAlign: 'bottom',
 211     },
 212     labelColumn: {
 213         minWidth: '120px',
 214     },
 215 });
 216
 217 export enum ProcessIOCardType {
 218     INPUT = 'Inputs',
 219     OUTPUT = 'Outputs',
 220 }
 221 export interface ProcessIOCardDataProps {
 222     process: Process;
 223     label: ProcessIOCardType;
 224     params: ProcessIOParameter[] | null;
 225     raw: any;
 226     mounts?: InputCollectionMount[];
 227     outputUuid?: string;
 228 }
 229
 230 export interface ProcessIOCardActionProps {
 231     navigateTo: (uuid: string) => void;
 232 }
 233
 234 const mapDispatchToProps = (dispatch: Dispatch): ProcessIOCardActionProps => ({
 235     navigateTo: (uuid) => dispatch<any>(navigateTo(uuid)),
 236 });
 237
 238 type ProcessIOCardProps = ProcessIOCardDataProps & ProcessIOCardActionProps & WithStyles<CssRules> & MPVPanelProps;
 239
 240 export const ProcessIOCard = withStyles(styles)(connect(null, mapDispatchToProps)(
 241     ({ classes, label, params, raw, mounts, outputUuid, doHidePanel, doMaximizePanel, doUnMaximizePanel, panelMaximized, panelName, process, navigateTo }: ProcessIOCardProps) => {
 242         const [mainProcTabState, setMainProcTabState] = useState(0);
 243         const [subProcTabState, setSubProcTabState] = useState(0);
 244         const handleMainProcTabChange = (event: React.MouseEvent<HTMLElement>, value: number) => {
 245             setMainProcTabState(value);
 246         }
 247         const handleSubProcTabChange = (event: React.MouseEvent<HTMLElement>, value: number) => {
 248             setSubProcTabState(value);
 249         }
 250
 251         const [showImagePreview, setShowImagePreview] = useState(false);
 252
 253         const PanelIcon = label === ProcessIOCardType.INPUT ? InputIcon : OutputIcon;
 254         const mainProcess = !process.containerRequest.requestingContainerUuid;
 255
 256         const loading = raw === null || raw === undefined || params === null;
 257         const hasRaw = !!(raw && Object.keys(raw).length > 0);
 258         const hasParams = !!(params && params.length > 0);
 259
 260         // Subprocess
 261         const hasInputMounts = !!(label === ProcessIOCardType.INPUT && mounts && mounts.length);
 262         const hasOutputCollecton = !!(label === ProcessIOCardType.OUTPUT && outputUuid);
 263
 264         return <Card className={classes.card} data-cy="process-io-card">
 265             <CardHeader
 266                 className={classes.header}
 267                 classes={{
 268                     content: classes.title,
 269                     avatar: classes.avatar,
 270                 }}
 271                 avatar={<PanelIcon className={classes.iconHeader} />}
 272                 title={
 273                     <Typography noWrap variant='h6' color='inherit'>
 274                         {label}
 275                     </Typography>
 276                 }
 277                 action={
 278                     <div>
 279                         { mainProcess && <Tooltip title={"Toggle Image Preview"} disableFocusListener>
 280                             <IconButton data-cy="io-preview-image-toggle" onClick={() =>{setShowImagePreview(!showImagePreview)}}>{showImagePreview ? <ImageIcon /> : <ImageOffIcon />}</IconButton>
 281                         </Tooltip> }
 282                         { doUnMaximizePanel && panelMaximized &&
 283                         <Tooltip title={`Unmaximize ${panelName || 'panel'}`} disableFocusListener>
 284                             <IconButton onClick={doUnMaximizePanel}><UnMaximizeIcon /></IconButton>
 285                         </Tooltip> }
 286                         { doMaximizePanel && !panelMaximized &&
 287                         <Tooltip title={`Maximize ${panelName || 'panel'}`} disableFocusListener>
 288                             <IconButton onClick={doMaximizePanel}><MaximizeIcon /></IconButton>
 289                         </Tooltip> }
 290                         { doHidePanel &&
 291                         <Tooltip title={`Close ${panelName || 'panel'}`} disableFocusListener>
 292                             <IconButton disabled={panelMaximized} onClick={doHidePanel}><CloseIcon /></IconButton>
 293                         </Tooltip> }
 294                     </div>
 295                 } />
 296             <CardContent className={classes.content}>
 297                 {mainProcess ?
 298                     (<>
 299                         {/* raw is undefined until params are loaded */}
 300                         {loading && <Grid container item alignItems='center' justify='center'>
 301                             <CircularProgress />
 302                         </Grid>}
 303                         {/* Once loaded, either raw or params may still be empty
 304                           *   Raw when all params are empty
 305                           *   Params when raw is provided by containerRequest properties but workflow mount is absent for preview
 306                           */}
 307                         {(!loading && (hasRaw || hasParams)) &&
 308                             <>
 309                                 <Tabs value={mainProcTabState} onChange={handleMainProcTabChange} variant="fullWidth" className={classes.symmetricTabs}>
 310                                     {/* params will be empty on processes without workflow definitions in mounts, so we only show raw */}
 311                                     {hasParams && <Tab label="Parameters" />}
 312                                     <Tab label="JSON" />
 313                                 </Tabs>
 314                                 {(mainProcTabState === 0 && params && hasParams) && <div className={classes.tableWrapper}>
 315                                         <ProcessIOPreview data={params} showImagePreview={showImagePreview} />
 316                                     </div>}
 317                                 {(mainProcTabState === 1 || !hasParams) && <div className={classes.tableWrapper}>
 318                                         <ProcessIORaw data={raw} />
 319                                     </div>}
 320                             </>}
 321                         {!loading && !hasRaw && !hasParams && <Grid container item alignItems='center' justify='center'>
 322                             <DefaultView messages={["No parameters found"]} />
 323                         </Grid>}
 324                     </>) :
 325                     // Subprocess
 326                     (<>
 327                         {loading && <Grid container item alignItems='center' justify='center'>
 328                             <CircularProgress />
 329                         </Grid>}
 330                         {!loading && (hasInputMounts || hasOutputCollecton || hasRaw) ?
 331                             <>
 332                                 <Tabs value={subProcTabState} onChange={handleSubProcTabChange} variant="fullWidth" className={classes.symmetricTabs}>
 333                                     {hasInputMounts && <Tab label="Collections" />}
 334                                     {hasOutputCollecton && <Tab label="Collection" />}
 335                                     <Tab label="JSON" />
 336                                 </Tabs>
 337                                 <div className={classes.tableWrapper}>
 338                                     {subProcTabState === 0 && hasInputMounts && <ProcessInputMounts mounts={mounts || []} />}
 339                                     {subProcTabState === 0 && hasOutputCollecton && <>
 340                                         {outputUuid && <Typography className={classes.collectionLink}>
 341                                             Output Collection: <MuiLink className={classes.keepLink} onClick={() => {navigateTo(outputUuid || "")}}>
 342                                             {outputUuid}
 343                                         </MuiLink></Typography>}
 344                                         <ProcessOutputCollectionFiles isWritable={false} currentItemUuid={outputUuid} />
 345                                     </>}
 346                                     {(subProcTabState === 1 || (!hasInputMounts && !hasOutputCollecton)) && <div className={classes.tableWrapper}>
 347                                         <ProcessIORaw data={raw} />
 348                                     </div>}
 349                                 </div>
 350                             </> :
 351                             <Grid container item alignItems='center' justify='center'>
 352                                 <DefaultView messages={["No data to display"]} />
 353                             </Grid>
 354                         }
 355                     </>)
 356                 }
 357             </CardContent>
 358         </Card>;
 359     }
 360 ));
 361
 362 export type ProcessIOValue = {
 363     display: ReactElement<any, any>;
 364     imageUrl?: string;
 365     collection?: ReactElement<any, any>;
 366     secondary?: boolean;
 367 }
 368
 369 export type ProcessIOParameter = {
 370     id: string;
 371     label: string;
 372     value: ProcessIOValue[];
 373 }
 374
 375 interface ProcessIOPreviewDataProps {
 376     data: ProcessIOParameter[];
 377     showImagePreview: boolean;
 378 }
 379
 380 type ProcessIOPreviewProps = ProcessIOPreviewDataProps & WithStyles<CssRules>;
 381
 382 const ProcessIOPreview = withStyles(styles)(
 383     ({ classes, data, showImagePreview }: ProcessIOPreviewProps) => {
 384         const showLabel = data.some((param: ProcessIOParameter) => param.label);
 385         return <Table className={classes.tableRoot} aria-label="Process IO Preview">
 386             <TableHead>
 387                 <TableRow>
 388                     <TableCell>Name</TableCell>
 389                     {showLabel && <TableCell className={classes.labelColumn}>Label</TableCell>}
 390                     <TableCell>Value</TableCell>
 391                     <TableCell>Collection</TableCell>
 392                 </TableRow>
 393             </TableHead>
 394             <TableBody>
 395                 {data.map((param: ProcessIOParameter) => {
 396                     const firstVal = param.value.length > 0 ? param.value[0] : undefined;
 397                     const rest = param.value.slice(1);
 398                     const mainRowClasses = {
 399                         [classes.noBorderRow]: (rest.length > 0),
 400                     };
 401
 402                     return <>
 403                         <TableRow className={classNames(mainRowClasses)} data-cy="process-io-param">
 404                             <TableCell>
 405                                 {param.id}
 406                             </TableCell>
 407                             {showLabel && <TableCell >{param.label}</TableCell>}
 408                             <TableCell>
 409                                 {firstVal && <ProcessValuePreview value={firstVal} showImagePreview={showImagePreview} />}
 410                             </TableCell>
 411                             <TableCell className={firstVal?.imageUrl ? classes.rowWithPreview : undefined}>
 412                                 <Typography className={classes.paramValue}>
 413                                     {firstVal?.collection}
 414                                 </Typography>
 415                             </TableCell>
 416                         </TableRow>
 417                         {rest.map((val, i) => {
 418                             const rowClasses = {
 419                                 [classes.noBorderRow]: (i < rest.length-1),
 420                                 [classes.secondaryRow]: val.secondary,
 421                             };
 422                             return <TableRow className={classNames(rowClasses)}>
 423                                 <TableCell />
 424                                 {showLabel && <TableCell />}
 425                                 <TableCell>
 426                                     <ProcessValuePreview value={val} showImagePreview={showImagePreview} />
 427                                 </TableCell>
 428                                 <TableCell className={firstVal?.imageUrl ? classes.rowWithPreview : undefined}>
 429                                     <Typography className={classes.paramValue}>
 430                                         {val.collection}
 431                                     </Typography>
 432                                 </TableCell>
 433                             </TableRow>
 434                         })}
 435                     </>;
 436                 })}
 437             </TableBody>
 438         </Table>;
 439 });
 440
 441 interface ProcessValuePreviewProps {
 442     value: ProcessIOValue;
 443     showImagePreview: boolean;
 444 }
 445
 446 const ProcessValuePreview = withStyles(styles)(
 447     ({value, showImagePreview, classes}: ProcessValuePreviewProps & WithStyles<CssRules>) =>
 448         <Typography className={classes.paramValue}>
 449             {value.imageUrl && showImagePreview ? <img className={classes.imagePreview} src={value.imageUrl} alt="Inline Preview" /> : ""}
 450             {value.imageUrl && !showImagePreview ? <ImagePlaceholder /> : ""}
 451             <span className={classNames(classes.valArray, value.secondary && classes.secondaryVal)}>
 452                 {value.display}
 453             </span>
 454         </Typography>
 455 )
 456
 457 interface ProcessIORawDataProps {
 458     data: ProcessIOParameter[];
 459 }
 460
 461 const ProcessIORaw = withStyles(styles)(
 462     ({ data }: ProcessIORawDataProps) =>
 463         <Paper elevation={0}>
 464             <DefaultCodeSnippet lines={[JSON.stringify(data, null, 2)]} linked />
 465         </Paper>
 466 );
 467
 468 interface ProcessInputMountsDataProps {
 469     mounts: InputCollectionMount[];
 470 }
 471
 472 type ProcessInputMountsProps = ProcessInputMountsDataProps & WithStyles<CssRules>;
 473
 474 const ProcessInputMounts = withStyles(styles)(connect((state: RootState) => ({
 475     auth: state.auth,
 476 }))(({ mounts, classes, auth }: ProcessInputMountsProps & { auth: AuthState }) => (
 477     <Table className={classes.tableRoot} aria-label="Process Input Mounts">
 478         <TableHead>
 479             <TableRow>
 480                 <TableCell>Path</TableCell>
 481                 <TableCell>Portable Data Hash</TableCell>
 482             </TableRow>
 483         </TableHead>
 484         <TableBody>
 485             {mounts.map(mount => (
 486                 <TableRow key={mount.path}>
 487                     <TableCell><pre>{mount.path}</pre></TableCell>
 488                     <TableCell>
 489                         <RouterLink to={getNavUrl(mount.pdh, auth)} className={classes.keepLink}>{mount.pdh}</RouterLink>
 490                     </TableCell>
 491                 </TableRow>
 492             ))}
 493         </TableBody>
 494     </Table>
 495 )));
 496
 497 type FileWithSecondaryFiles = {
 498     secondaryFiles: File[];
 499 }
 500
 501 export const getIOParamDisplayValue = (auth: AuthState, input: CommandInputParameter | CommandOutputParameter, pdh?: string): ProcessIOValue[] => {
 502     switch (true) {
 503         case isPrimitiveOfType(input, CWLType.BOOLEAN):
 504             const boolValue = (input as BooleanCommandInputParameter).value;
 505             return boolValue !== undefined &&
 506                     !(Array.isArray(boolValue) && boolValue.length === 0) ?
 507                 [{display: renderPrimitiveValue(boolValue, false) }] :
 508                 [{display: <EmptyValue />}];
 509
 510         case isPrimitiveOfType(input, CWLType.INT):
 511         case isPrimitiveOfType(input, CWLType.LONG):
 512             const intValue = (input as IntCommandInputParameter).value;
 513             return intValue !== undefined &&
 514                     // Missing values are empty array
 515                     !(Array.isArray(intValue) && intValue.length === 0) ?
 516                 [{display: renderPrimitiveValue(intValue, false) }]
 517                 : [{display: <EmptyValue />}];
 518
 519         case isPrimitiveOfType(input, CWLType.FLOAT):
 520         case isPrimitiveOfType(input, CWLType.DOUBLE):
 521             const floatValue = (input as FloatCommandInputParameter).value;
 522             return floatValue !== undefined &&
 523                     !(Array.isArray(floatValue) && floatValue.length === 0) ?
 524                 [{display: renderPrimitiveValue(floatValue, false) }]:
 525                 [{display: <EmptyValue />}];
 526
 527         case isPrimitiveOfType(input, CWLType.STRING):
 528             const stringValue = (input as StringCommandInputParameter).value || undefined;
 529             return stringValue !== undefined &&
 530                     !(Array.isArray(stringValue) && stringValue.length === 0) ?
 531                 [{display: renderPrimitiveValue(stringValue, false) }] :
 532                 [{display: <EmptyValue />}];
 533
 534         case isPrimitiveOfType(input, CWLType.FILE):
 535             const mainFile = (input as FileCommandInputParameter).value;
 536             // secondaryFiles: File[] is not part of CommandOutputParameter so we cast to access secondaryFiles
 537             const secondaryFiles = ((mainFile as unknown) as FileWithSecondaryFiles)?.secondaryFiles || [];
 538             const files = [
 539                 ...(mainFile && !(Array.isArray(mainFile) && mainFile.length === 0) ? [mainFile] : []),
 540                 ...secondaryFiles
 541             ];
 542             const mainFilePdhUrl = mainFile ? getResourcePdhUrl(mainFile, pdh) : "";
 543             return files.length ?
 544                 files.map((file, i) => fileToProcessIOValue(file, (i > 0), auth, pdh, (i > 0 ? mainFilePdhUrl : ""))) :
 545                 [{display: <EmptyValue />}];
 546
 547         case isPrimitiveOfType(input, CWLType.DIRECTORY):
 548             const directory = (input as DirectoryCommandInputParameter).value;
 549             return directory !== undefined &&
 550                     !(Array.isArray(directory) && directory.length === 0) ?
 551                 [directoryToProcessIOValue(directory, auth, pdh)] :
 552                 [{display: <EmptyValue />}];
 553
 554         case typeof input.type === 'object' &&
 555             !(input.type instanceof Array) &&
 556             input.type.type === 'enum':
 557             const enumValue = (input as EnumCommandInputParameter).value;
 558             return enumValue !== undefined && enumValue ?
 559                 [{ display: <pre>{enumValue}</pre> }] :
 560                 [{display: <EmptyValue />}];
 561
 562         case isArrayOfType(input, CWLType.STRING):
 563             const strArray = (input as StringArrayCommandInputParameter).value || [];
 564             return strArray.length ?
 565                 [{ display: <>{strArray.map((val) => renderPrimitiveValue(val, true))}</> }] :
 566                 [{display: <EmptyValue />}];
 567
 568         case isArrayOfType(input, CWLType.INT):
 569         case isArrayOfType(input, CWLType.LONG):
 570             const intArray = (input as IntArrayCommandInputParameter).value || [];
 571             return intArray.length ?
 572                 [{ display: <>{intArray.map((val) => renderPrimitiveValue(val, true))}</> }] :
 573                 [{display: <EmptyValue />}];
 574
 575         case isArrayOfType(input, CWLType.FLOAT):
 576         case isArrayOfType(input, CWLType.DOUBLE):
 577             const floatArray = (input as FloatArrayCommandInputParameter).value || [];
 578             return floatArray.length ?
 579                 [{ display: <>{floatArray.map((val) => renderPrimitiveValue(val, true))}</> }] :
 580                 [{display: <EmptyValue />}];
 581
 582         case isArrayOfType(input, CWLType.FILE):
 583             const fileArrayMainFiles = ((input as FileArrayCommandInputParameter).value || []);
 584             const firstMainFilePdh = (fileArrayMainFiles.length > 0 && fileArrayMainFiles[0]) ? getResourcePdhUrl(fileArrayMainFiles[0], pdh) : "";
 585
 586             // Convert each main file into separate arrays of ProcessIOValue to preserve secondaryFile grouping
 587             const fileArrayValues = fileArrayMainFiles.map((mainFile: File, i): ProcessIOValue[] => {
 588                 const secondaryFiles = ((mainFile as unknown) as FileWithSecondaryFiles)?.secondaryFiles || [];
 589                 return [
 590                     // Pass firstMainFilePdh to secondary files and every main file besides the first to hide pdh if equal
 591                     ...(mainFile ? [fileToProcessIOValue(mainFile, false, auth, pdh, i > 0 ? firstMainFilePdh : "")] : []),
 592                     ...(secondaryFiles.map(file => fileToProcessIOValue(file, true, auth, pdh, firstMainFilePdh)))
 593                 ];
 594             // Reduce each mainFile/secondaryFile group into single array preserving ordering
 595             }).reduce((acc: ProcessIOValue[], mainFile: ProcessIOValue[]) => (acc.concat(mainFile)), []);
 596
 597             return fileArrayValues.length ?
 598                 fileArrayValues :
 599                 [{display: <EmptyValue />}];
 600
 601         case isArrayOfType(input, CWLType.DIRECTORY):
 602             const directories = (input as DirectoryArrayCommandInputParameter).value || [];
 603             return directories.length ?
 604                 directories.map(directory => directoryToProcessIOValue(directory, auth, pdh)) :
 605                 [{display: <EmptyValue />}];
 606
 607         default:
 608             return [{display: <UnsupportedValue />}];
 609     }
 610 };
 611
 612 const renderPrimitiveValue = (value: any, asChip: boolean) => {
 613     const isObject = typeof value === 'object';
 614     if (!isObject) {
 615         return asChip ? <Chip label={String(value)} /> : <pre>{String(value)}</pre>;
 616     } else {
 617         return asChip ? <UnsupportedValueChip /> : <UnsupportedValue />;
 618     }
 619 };
 620
 621 /*
 622  * @returns keep url without keep: prefix
 623  */
 624 const getKeepUrl = (file: File | Directory, pdh?: string): string => {
 625     const isKeepUrl = file.location?.startsWith('keep:') || false;
 626     const keepUrl = isKeepUrl ?
 627                         file.location?.replace('keep:', '') :
 628                         pdh ? `${pdh}/${file.location}` : file.location;
 629     return keepUrl || '';
 630 };
 631
 632 interface KeepUrlProps {
 633     auth: AuthState;
 634     res: File | Directory;
 635     pdh?: string;
 636 }
 637
 638 const getResourcePdhUrl = (res: File | Directory, pdh?: string): string => {
 639     const keepUrl = getKeepUrl(res, pdh);
 640     return keepUrl ? keepUrl.split('/').slice(0, 1)[0] : '';
 641 };
 642
 643 const KeepUrlBase = withStyles(styles)(({auth, res, pdh, classes}: KeepUrlProps & WithStyles<CssRules>) => {
 644     const pdhUrl = getResourcePdhUrl(res, pdh);
 645     // Passing a pdh always returns a relative wb2 collection url
 646     const pdhWbPath = getNavUrl(pdhUrl, auth);
 647     return pdhUrl && pdhWbPath ?
 648         <Tooltip title={"View collection in Workbench"}><RouterLink to={pdhWbPath} className={classes.keepLink}>{pdhUrl}</RouterLink></Tooltip> :
 649         <></>;
 650 });
 651
 652 const KeepUrlPath = withStyles(styles)(({auth, res, pdh, classes}: KeepUrlProps & WithStyles<CssRules>) => {
 653     const keepUrl = getKeepUrl(res, pdh);
 654     const keepUrlParts = keepUrl ? keepUrl.split('/') : [];
 655     const keepUrlPath = keepUrlParts.length > 1 ? keepUrlParts.slice(1).join('/') : '';
 656
 657     const keepUrlPathNav = getKeepNavUrl(auth, res, pdh);
 658     return keepUrlPathNav ?
 659         <Tooltip title={"View in keep-web"}><a className={classes.keepLink} href={keepUrlPathNav} target="_blank" rel="noopener noreferrer">{keepUrlPath || '/'}</a></Tooltip> :
 660         <EmptyValue />;
 661 });
 662
 663 const getKeepNavUrl = (auth: AuthState, file: File | Directory, pdh?: string): string => {
 664     let keepUrl = getKeepUrl(file, pdh);
 665     return (getInlineFileUrl(`${auth.config.keepWebServiceUrl}/c=${keepUrl}?api_token=${auth.apiToken}`, auth.config.keepWebServiceUrl, auth.config.keepWebInlineServiceUrl));
 666 };
 667
 668 const getImageUrl = (auth: AuthState, file: File, pdh?: string): string => {
 669     const keepUrl = getKeepUrl(file, pdh);
 670     return getInlineFileUrl(`${auth.config.keepWebServiceUrl}/c=${keepUrl}?api_token=${auth.apiToken}`, auth.config.keepWebServiceUrl, auth.config.keepWebInlineServiceUrl);
 671 };
 672
 673 const isFileImage = (basename?: string): boolean => {
 674     return basename ? (mime.getType(basename) || "").startsWith('image/') : false;
 675 };
 676
 677 const isFileUrl = (location?: string): boolean => (
 678     !!location && !KEEP_URL_REGEX.exec(location) &&
 679     (location.startsWith("http://") || location.startsWith("https://"))
 680 );
 681
 682 const normalizeDirectoryLocation = (directory: Directory): Directory => {
 683     if (!directory.location) {
 684         return directory;
 685     }
 686     return {
 687         ...directory,
 688         location: (directory.location || '').endsWith('/') ? directory.location : directory.location + '/',
 689     };
 690 };
 691
 692 const directoryToProcessIOValue = (directory: Directory, auth: AuthState, pdh?: string): ProcessIOValue => {
 693     if (isExternalValue(directory)) {return {display: <UnsupportedValue />}}
 694
 695     const normalizedDirectory = normalizeDirectoryLocation(directory);
 696     return {
 697         display: <KeepUrlPath auth={auth} res={normalizedDirectory} pdh={pdh}/>,
 698         collection: <KeepUrlBase auth={auth} res={normalizedDirectory} pdh={pdh}/>,
 699     };
 700 };
 701
 702 const fileToProcessIOValue = (file: File, secondary: boolean, auth: AuthState, pdh: string | undefined, mainFilePdh: string): ProcessIOValue => {
 703     if (isExternalValue(file)) {return {display: <UnsupportedValue />}}
 704
 705     if (isFileUrl(file.location)) {
 706         return {
 707             display: <MuiLink href={file.location} target="_blank">{file.location}</MuiLink>,
 708             secondary,
 709         };
 710     }
 711
 712     const resourcePdh = getResourcePdhUrl(file, pdh);
 713     return {
 714         display: <KeepUrlPath auth={auth} res={file} pdh={pdh}/>,
 715         secondary,
 716         imageUrl: isFileImage(file.basename) ? getImageUrl(auth, file, pdh) : undefined,
 717         collection: (resourcePdh !== mainFilePdh) ? <KeepUrlBase auth={auth} res={file} pdh={pdh}/> : <></>,
 718     }
 719 };
 720
 721 const isExternalValue = (val: any) =>
 722     Object.keys(val).includes('$import') ||
 723     Object.keys(val).includes('$include')
 724
 725 const EmptyValue = withStyles(styles)(
 726     ({classes}: WithStyles<CssRules>) => <span className={classes.emptyValue}>No value</span>
 727 );
 728
 729 const UnsupportedValue = withStyles(styles)(
 730     ({classes}: WithStyles<CssRules>) => <span className={classes.emptyValue}>Cannot display value</span>
 731 );
 732
 733 const UnsupportedValueChip = withStyles(styles)(
 734     ({classes}: WithStyles<CssRules>) => <Chip icon={<InfoIcon />} label={"Cannot display value"} />
 735 );
 736
 737 const ImagePlaceholder = withStyles(styles)(
 738     ({classes}: WithStyles<CssRules>) => <span className={classes.imagePlaceholder}><ImageIcon /></span>
 739 );