From f80667171aa3d9efb35d60faa4d9cdabb50ca330 Mon Sep 17 00:00:00 2001 From: Sarah Wait Zaranek Date: Tue, 14 Jul 2020 17:43:25 +0000 Subject: [PATCH] Updating HTML edam comments Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek no issue # --- WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl | 8 ++++---- WGS-processing/cwl/helper/fastqc.cwl | 2 +- WGS-processing/cwl/helper/generate-report.cwl | 4 ++-- WGS-processing/cwl/helper/report-wf.cwl | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-) diff --git a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl index ea5b93b..522bd82 100644 --- a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl +++ b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl @@ -47,18 +47,18 @@ inputs: label: Function used to create HTML report headhtml: type: File - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML label: Header for HTML report tailhtml: type: File - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML label: Footer for HTML report outputs: qc-html: type: File[] label: FASTQ QC reports - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML outputSource: fastqc/out-html qc-zip: type: File[] @@ -72,7 +72,7 @@ outputs: report: type: File outputSource: generate-report/report - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML label: ClinVar variant report steps: diff --git a/WGS-processing/cwl/helper/fastqc.cwl b/WGS-processing/cwl/helper/fastqc.cwl index 30193a1..70cdc76 100644 --- a/WGS-processing/cwl/helper/fastqc.cwl +++ b/WGS-processing/cwl/helper/fastqc.cwl @@ -27,7 +27,7 @@ outputs: out-html: type: File[] label: FASTQ QC reports - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML outputBinding: glob: "*html" out-zip: diff --git a/WGS-processing/cwl/helper/generate-report.cwl b/WGS-processing/cwl/helper/generate-report.cwl index 67bf19d..3773f7d 100644 --- a/WGS-processing/cwl/helper/generate-report.cwl +++ b/WGS-processing/cwl/helper/generate-report.cwl @@ -23,7 +23,7 @@ inputs: label: Sample Name headhtml: type: File - format: edam:format_2331# HTML + format: edam:format_2331 # HTML label: Header for HTML report tailhtml: type: File @@ -33,7 +33,7 @@ inputs: outputs: report: type: File - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML label: ClinVar variant report outputBinding: glob: "*html" diff --git a/WGS-processing/cwl/helper/report-wf.cwl b/WGS-processing/cwl/helper/report-wf.cwl index 296e199..9e675ff 100644 --- a/WGS-processing/cwl/helper/report-wf.cwl +++ b/WGS-processing/cwl/helper/report-wf.cwl @@ -19,7 +19,7 @@ inputs: label: Function used to create HTML report headhtml: type: File - format: edam:format_2331# HTML + format: edam:format_2331 # HTML label: Header for HTML report tailhtml: type: File @@ -29,7 +29,7 @@ inputs: outputs: report: type: File - format: edam:format_1964 # HTML + format: edam:format_2331 # HTML label: ClinVar variant report outputSource: generate-report/report -- 2.30.2