From e6e2eee883a525559734f74a337fbfef8f44f7f9 Mon Sep 17 00:00:00 2001 From: Sarah Wait Zaranek Date: Wed, 1 Jul 2020 18:42:43 +0000 Subject: [PATCH] Updating yml to include intervals Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek no issue # --- .../yml/helper/{gather-vcf.yml => gather-array-vcf.yml} | 0 .../{gatk-applyBQSR.yml => gatk-applyBQSR-with-interval.yml} | 4 ++++ 2 files changed, 4 insertions(+) rename WGS-processing/yml/helper/{gather-vcf.yml => gather-array-vcf.yml} (100%) rename WGS-processing/yml/helper/{gatk-applyBQSR.yml => gatk-applyBQSR-with-interval.yml} (74%) diff --git a/WGS-processing/yml/helper/gather-vcf.yml b/WGS-processing/yml/helper/gather-array-vcf.yml similarity index 100% rename from WGS-processing/yml/helper/gather-vcf.yml rename to WGS-processing/yml/helper/gather-array-vcf.yml diff --git a/WGS-processing/yml/helper/gatk-applyBQSR.yml b/WGS-processing/yml/helper/gatk-applyBQSR-with-interval.yml similarity index 74% rename from WGS-processing/yml/helper/gatk-applyBQSR.yml rename to WGS-processing/yml/helper/gatk-applyBQSR-with-interval.yml index 0241acd..6259b09 100644 --- a/WGS-processing/yml/helper/gatk-applyBQSR.yml +++ b/WGS-processing/yml/helper/gatk-applyBQSR-with-interval.yml @@ -11,3 +11,7 @@ sample: ERR1726424 recaltable: class: File location: keep:fdce030a5036edb9b821222e316ee706+143/ERR1726424_recal_data.table + +intervallist: + class: File + location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list -- 2.30.2