From c7a0db0593e73f93511f106d0caf9890e5d6a5cf Mon Sep 17 00:00:00 2001
From: Sarah Wait Zaranek <swz@curii.com>
Date: Thu, 25 Jun 2020 14:42:13 +0000
Subject: [PATCH] Adding labels and metadata Arvados-DCO-1.1-Signed-off-by:
 Sarah Wait Zaranek <swz@curii.com> no issue #

---
 .../.scatter-gatk-wf-with-interval.cwl.swp      | Bin 0 -> 12288 bytes
 .../cwl/helper/gatk-wf-with-interval.cwl        |  12 ++++++++++++
 2 files changed, 12 insertions(+)
 create mode 100644 WGS-processing/cwl/helper/.scatter-gatk-wf-with-interval.cwl.swp

diff --git a/WGS-processing/cwl/helper/.scatter-gatk-wf-with-interval.cwl.swp b/WGS-processing/cwl/helper/.scatter-gatk-wf-with-interval.cwl.swp
new file mode 100644
index 0000000000000000000000000000000000000000..965f2d055b981cc8361680107952cd3673ac1fab
GIT binary patch
literal 12288
zcmeI2KWrRD6voGZ5ClRX&>#UCV|QqGeKsNS7J%)<CITafgIypT&F#+Zt-QCh%<TH&
z%A!U{6rn*DAW?-#Km!yAi2@1`1vG&IL5Tzf0wF-6;hWjnyR%~_5*^B{^z+{QfA5<&
zbF%KWr&dod)8qcb1kas>wBP<?{ge0a-M;h=A&N=X)%DkSvNY+Id739)%r{%U>hdh}
zRW&=E`AlxISSVJcenf(pmCRFd927|r*e0*6N+DC01#3$yULi%qmBL&>)XxIURB#!n
zh?OOmUc$-^uix?dY1#GC995ev^U?7d2D)aafKvbp940f<ttl<V#DnAX?xW8+Rh$A&
z0jGddz$xGqa0)mDoB~dP>qvpJ7$e*8_Xg|pnthM$dE26UIR%^oP64NYQ@|<U6mSYS
z1)Ks-0jGddz$x%QRDi{V{BtvY>%RrY<M;pO|Nmc)5b`5<6TAUl1qql3b6^%sg9$*u
zmv<2IA-D*3z$>5&o&qPpL*M~$7q|)heVCA6!1v%A@F}<mUI#COE;t6p!9Czc@cZqA
zd=5SXAA?I^2b>2Bzz5^t&)W$34g3tg10R9+zy+`k*1;+8D3}Ce;HN|I7kmvq0B?bp
zz%$@+@EDi^N5LWR!>xpT0p10#feT<2+z;*pN5Egu^jmNld<AxZ)>#7gI0c*nP64NY
zQ{XyNfO@oBmPHr@JZ3$Smm(9%mM>%yoH{wTe6HoUPWS>zeYT@QPZf1}kC{H3T&h&$
zLB>k1%BDre9Wq(>QXwH!PaPh(4xy@U+%q?s%vq1Cf*}bJv#2mjBc3Zh?A-77{Uoo9
zCALuoEGaT?#-H+e?sv;xhJlfY`59gal_I-wYdAhZ>SERQBhhOTAe;9f5fawp5mgz|
z=aKQ)<&wwAX4H9sng&WG@1QP^VAkNHZBndPWT>y-wo(sfQZkq!dBifW%Zf~tTZJxU
z$gk8LOy4vQ&0AJ^Nb9vdGtxs3lW0k4kIRI6OREcuMrb-PRhwv6Y;rTRRKW{XWNFz{
zsi67PNi(kOfQ?-Ab7;j?E2JX@+q|z^1K+Qdp{+L`f6Va4DVs$a(#8O7o$1lIdq8rj
zR(v1X!e&3r9QA%RQybqJHSEHXsB*1Foy=-V|H-|^pP|*e1-ARNyD}uI<OOz&;xT_<
za8Z>jqLMn0Ms_tA4LZ}6;w1WIJ2eHxBaz2UZY}Elvm#`y&9ji|sGteYxy0d&X-A44
zU79=lBz>ZZIJ#g$&dk&ivd5r^IjeQy+{{$#5jtTeGJSNEhEy+w;;3OEsU2v7&{}Yk
zs}$#@jyZ}+=_W&Vab8j#>&Pn}nN^jtt{B~t!LA<cvYEoJryUlZI%H`fvaOzwMK_J8
z31(x!{Ie@(%#f@2i)ls-v+j<ZgL>cWnk(jz)2DG&jSL!kWA6adrnhe0kJG4*bhDEk
zR_~-KC^qQl<K7z<+WnCsEYF86tk*V$J&|DQtchouD@sR$uy*d}e`|Jn7W=(8w{mvQ
zOt5RihezDB8H3x_`m3ydI*<8z9Rxz^Fr1%TraEPu8sktASGbXI4DI!^pIy_(j!(lb
z4877SeY=n}$LXnq&!bVs6pq45eY6)jD=UfX|HTTi*yFhta@eVA_l4Z(WTL-MM>!m%
sCvT!`cMQ{Jg61-TPXgbIgPW}me?^HkY|So6kSo7he}9G)sroJQFDFCP9smFU

literal 0
HcmV?d00001

diff --git a/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl b/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
index 4e9f456..e1e54ee 100644
--- a/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
+++ b/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
@@ -1,5 +1,6 @@
 cwlVersion: v1.1
 class: Workflow
+label: Variant calling workflow for single interval 
 
 requirements:
   - class: SubworkflowFeatureRequirement
@@ -66,3 +67,14 @@ steps:
       reference: reference
       sample: sample
     out: [filteredgvcf]
+
+s:codeRepository: https://github.com/arvados/arvados-tutorial
+s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
+
+$namespaces:
+ s: https://schema.org/
+ edam: http://edamontology.org/
+
+$schemas:
+ - https://schema.org/version/latest/schema.rdf
+ - http://edamontology.org/EDAM_1.18.owl
-- 
2.30.2