From 97a8e57f2f10532ca3d48bfa92c8ff4e0e73f393 Mon Sep 17 00:00:00 2001 From: Jiayong Li Date: Mon, 28 Dec 2020 22:07:21 +0000 Subject: [PATCH] Add chr19 yml by changing fullintervallist Arvados-DCO-1.1-Signed-off-by: Jiayong Li refs #17049 --- .../yml/wgs-processing-wf-chr19.yml | 43 +++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 WGS-processing/yml/wgs-processing-wf-chr19.yml diff --git a/WGS-processing/yml/wgs-processing-wf-chr19.yml b/WGS-processing/yml/wgs-processing-wf-chr19.yml new file mode 100644 index 0000000..783b388 --- /dev/null +++ b/WGS-processing/yml/wgs-processing-wf-chr19.yml @@ -0,0 +1,43 @@ +reference: + class: File + format: edam:format_1929 + location: keep:18657d75efb4afd31a14bb204d073239+13611/GRCh38_no_alt_plus_hs38d1_analysis_set.fna + +fullintervallist: + class: File + location: keep:380552882945f62850d298f8e86e5039+75/chr19-scattered.interval_list + +fastqdir: + class: Directory + location: keep:35d4f4c5720a1e1c7b5c583cc901c3e0+3765 + +clinvarvcf: + class: File + format: edam:format_3016 + location: keep:18657d75efb4afd31a14bb204d073239+13611/clinvar.vcf.gz + +reportfunc: + class: File + location: ../src/annotation/generatereport.py + +headhtml: + class: File + format: edam:format_2331 + location: ../src/annotation/head.html + +tailhtml: + class: File + format: edam:format_2331 + location: ../src/annotation/tail.html + +scattercount: '20' + +knownsites1: + class: File + format: edam:format_3016 + location: keep:18657d75efb4afd31a14bb204d073239+13611/Homo_sapiens_assembly38.dbsnp138.vcf + +knownsites2: + class: File + format: edam:format_3016 + location: keep:18657d75efb4afd31a14bb204d073239+13611/Homo_sapiens_assembly38.known_indels.vcf.gz -- 2.30.2