From 3d155b11968ab1463d537c1ee06566b96161fe9f Mon Sep 17 00:00:00 2001 From: Sarah Wait Zaranek Date: Tue, 7 Jul 2020 00:41:03 +0000 Subject: [PATCH] Adding more formats to yml Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek no issue # --- WGS-processing/yml/helper/samtools-sort.yml | 1 + WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml | 3 +++ 2 files changed, 4 insertions(+) diff --git a/WGS-processing/yml/helper/samtools-sort.yml b/WGS-processing/yml/helper/samtools-sort.yml index 7c27a9c..7d85dd4 100644 --- a/WGS-processing/yml/helper/samtools-sort.yml +++ b/WGS-processing/yml/helper/samtools-sort.yml @@ -1,5 +1,6 @@ bam: class: File + format: edam:format_2572 location: keep:su92l-4zz18-v4m3dx8agdp1y9r/WGC069888D.bam sample: WGC069888D diff --git a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml index 4a36ecb..a6d7414 100644 --- a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml +++ b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml @@ -1,9 +1,11 @@ bam: class: File + format: edam:format_2572 location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam reference: class: File + format: edam:format_1929 location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa sample: ERR1726424 @@ -12,4 +14,5 @@ scattercount: '32' knownsites: class: File + format: edam:format_3016 location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz -- 2.30.2