From 2f8908c77a8f9031d1069f00aeda40c12acf0fa1 Mon Sep 17 00:00:00 2001
From: Sarah Wait Zaranek <swz@curii.com>
Date: Wed, 1 Jul 2020 16:46:08 +0000
Subject: [PATCH] Adding metadata Arvados-DCO-1.1-Signed-off-by: Sarah Wait
 Zaranek <swz@curii.com> no issue #

---
 WGS-processing/cwl/helper/report-wf.cwl | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/WGS-processing/cwl/helper/report-wf.cwl b/WGS-processing/cwl/helper/report-wf.cwl
index 30857f4..0029018 100644
--- a/WGS-processing/cwl/helper/report-wf.cwl
+++ b/WGS-processing/cwl/helper/report-wf.cwl
@@ -5,20 +5,32 @@ label: Report generation workflow
 inputs:
   gvcf: 
     type: File
+    format: edam:format_3016 # GVCF
+    label: Gathered GVCF
   samplename:
     type: string
+    label: Sample Name
   clinvarvcf:
     type: File
+    format: edam:format_3016 # VCF
+    label: Reference VCF for ClinVar
   reportfunc:
     type: File
+    label: Function used to create HTML report
   headhtml:
     type: File
+    format: edam:format_2331# HTML
+    label: Header for HTML report
   tailhtml:   
     type: File
+    format: edam:format_2331 # HTML
+    label: Footer for HTML report
 
 outputs:
   report:
     type: File
+    format: edam:format_1964 # HTML
+    label: ClinVar variant report
     outputSource: generate-report/report
 
 steps:
@@ -44,3 +56,14 @@ steps:
       headhtml: headhtml
       tailhtml: tailhtml
     out: [report]
+
+s:codeRepository: https://github.com/arvados/arvados-tutorial
+s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
+
+$namespaces:
+ s: https://schema.org/
+ edam: http://edamontology.org/
+
+$schemas:
+ - https://schema.org/version/latest/schema.rdf
+ - http://edamontology.org/EDAM_1.18.owl
-- 
2.30.2