From 2753923e31f8560b2a543864cc5540b688e9e9ab Mon Sep 17 00:00:00 2001 From: Sarah Wait Zaranek Date: Tue, 23 Jun 2020 04:40:42 +0000 Subject: [PATCH] Updating docker file for fastqc Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek no issue # --- WGS-processing/docker/fastqc/Dockerfile | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/WGS-processing/docker/fastqc/Dockerfile b/WGS-processing/docker/fastqc/Dockerfile index 6d9badb..472bdbe 100644 --- a/WGS-processing/docker/fastqc/Dockerfile +++ b/WGS-processing/docker/fastqc/Dockerfile @@ -3,13 +3,11 @@ USER root MAINTAINER Sarah Wait Zaranek RUN apt-get update -qy +RUN apt-get install -y apt-utils RUN apt-get install -qy build-essential wget cmake zlib1g-dev python-pip unzip libbz2-dev liblzma-dev libcurl4-openssl-dev libncurses-dev +RUN apt-get update RUN mkdir -p /usr/share/man/man1 RUN apt-get install -qy default-jdk -ADD fastqc_v0.11.9.zip / -RUN unzip fastqc_v0.11.9.zip - -WORKDIR / - +RUN cd /tmp && wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip && unzip fastqc_v0.11.9.zip && mv FastQC /usr/local -- 2.30.2