From 10ba8ab79262d0109f03d46c32d6898227c674c5 Mon Sep 17 00:00:00 2001 From: Sarah Wait Zaranek Date: Fri, 19 Jun 2020 20:54:20 +0000 Subject: [PATCH] Updating readme Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek no issue # --- WGS-processing/README.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/WGS-processing/README.md b/WGS-processing/README.md index 507fb3a..51a0551 100644 --- a/WGS-processing/README.md +++ b/WGS-processing/README.md @@ -8,17 +8,17 @@ This directory contains an Arvados demo showing processing of whole genome seque Workflows are written in CWL v1.1. Subdirectories are: -cwl - contains CWL code for the demo -yml - contains yml inputs for cwl demo code -src - contains any src code for the demo -docker - contains dockerfiles necessary to re-create any needed docker images +* cwl - contains CWL code for the demo +* yml - contains yml inputs for cwl demo code +* src - contains any src code for the demo +* docker - contains dockerfiles necessary to re-create any needed docker images To run the workflow: -1. cd into cwl directory +* cd into cwl directory -2. run the following: -arvados-cwl-runner --no-wait --project-uuid YOUR_PROJECT_UUID wgs-processing-wf.cwl ../yml/YOURINPUTS.yml +* run the following +** arvados-cwl-runner --no-wait --project-uuid YOUR_PROJECT_UUID wgs-processing-wf.cwl ../yml/YOURINPUTS.yml About the Demo Data: WGS Data used in this demo is public data made available by the Personal Genome Project. This data is from the PGP-UK (https://www.personalgenomes.org.uk/). -- 2.30.2