Adding arv to namespace

Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #

diff --git a/WGS-processing/cwl/helper/.gatk-splitintervals.cwl.swp b/WGS-processing/cwl/helper/.gatk-splitintervals.cwl.swp
deleted file mode 100644 (file)
index c7eb3dc..0000000
Binary files a/WGS-processing/cwl/helper/.gatk-splitintervals.cwl.swp and /dev/null differ

diff --git a/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl b/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
index 71cb27fa94283c45f2faae389735ad56f27421f8..2ad23b7f8dc22ed0e6da2de068af5d1d08c0e612 100644 (file)
--- a/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
+++ b/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
@@ -84,6 +84,8 @@ s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
 $namespaces:
  s: https://schema.org/
  edam: http://edamontology.org/
+ arv: "http://arvados.org/cwl#"
+ cwltool: "http://commonwl.org/cwltool#"
 
 $schemas:
  - https://schema.org/version/latest/schema.rdf