X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/d147d1d1fafeeea06bd09d9479337b0f5aab43b0..c604c42bb92a6301b13a250582eabed509adaae1:/WGS-processing/cwl/helper/gatk-applyBSQR-with-interval.cwl

diff --git a/WGS-processing/cwl/helper/gatk-applyBSQR-with-interval.cwl b/WGS-processing/cwl/helper/gatk-applyBSQR-with-interval.cwl
index 52413a6..f6d625a 100644
--- a/WGS-processing/cwl/helper/gatk-applyBSQR-with-interval.cwl
+++ b/WGS-processing/cwl/helper/gatk-applyBSQR-with-interval.cwl
@@ -54,7 +54,7 @@ outputs:
     format: edam:format_2572 # BAM
     label: Recalibrated BAM for given interval
     secondaryFiles:
-      - .bai
+      - ^.bai
     outputBinding:
       glob: "*nodups_BQSR.bam"