X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/c0ee45941b6c3bbe97a12ff8e5345152b503a6bc..7a2d69e125ee52fd3a7a6eeca6f673c6a083033e:/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl

diff --git a/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl b/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
index cf815a5..38e185d 100644
--- a/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
+++ b/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
@@ -27,7 +27,7 @@ inputs:
   sample: 
     type: string
     label: Sample Name
-  knownsites1:
+  knownsites:
     type: File
     format: edam:format_3016 # VCF
     label: VCF of known polymorphic sites for BQSR
@@ -51,7 +51,7 @@ steps:
       bam: bam
       reference: reference
       sample: sample
-      knownsites1: knownsites1
+      knownsites: knownsites
       intervallist: intervallist
     out: [recaltable]
   applyBQSR: