X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/c0ee45941b6c3bbe97a12ff8e5345152b503a6bc..7a2d69e125ee52fd3a7a6eeca6f673c6a083033e:/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl

diff --git a/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl b/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
index 7e5bf4d..6df9de1 100644
--- a/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
+++ b/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
@@ -44,7 +44,7 @@ inputs:
   sample:
     type: string
     label: Sample Name
-  knownsites1: 
+  knownsites: 
     type: File
     format: edam:format_3016 # VCF
     label: VCF of known polymorphic sites for BQSR
@@ -72,7 +72,7 @@ arguments:
   - prefix: "-I"
     valueFrom: $(inputs.bam.basename)
   - prefix: "--known-sites"
-    valueFrom: $(inputs.knownsites1)
+    valueFrom: $(inputs.knownsites)
   - prefix: "-L"
     valueFrom: $(inputs.intervallist)
   - prefix: "-O"