X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/c0ee45941b6c3bbe97a12ff8e5345152b503a6bc..7a2d69e125ee52fd3a7a6eeca6f673c6a083033e:/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl

diff --git a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index 86d1e10..56efe65 100644
--- a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@ -113,7 +113,7 @@ steps:
       bam: samtools-index/indexedbam
       sample: sample
       scattercount: scattercount
-      knownsites1: knownsites
+      knownsites: knownsites
     out: [gatheredgvcf]
   generate-report:
     run: report-wf.cwl