X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/974a6542eec937b12f7c78c308cd5dd4deee521f..f46aac417fb5b8b3d3db810b9a62e94571765f77:/WGS-processing/yml/helper/gatk-baserecalibrator.yml

diff --git a/WGS-processing/yml/helper/gatk-baserecalibrator.yml b/WGS-processing/yml/helper/gatk-baserecalibrator.yml
new file mode 100644
index 0000000..d4b3c50
--- /dev/null
+++ b/WGS-processing/yml/helper/gatk-baserecalibrator.yml
@@ -0,0 +1,14 @@
+bam:
+  class: File
+  location: keep:79407f4f0d46a44fcc9c377461ee85fc+53752/marked_dupsERR1726424.sorted.bam
+
+reference:
+  class: File
+  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+
+sample: ERR1726424
+
+knownsites1:
+  class: File
+  location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
+